selection of interesting genes for a KS test in TopGO
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l.santiago • 0
@lsantiago-13790
Last seen 6.6 years ago

KS test does not require an arbitrary p-value threshold, so why to I need to provide a threshold in a function to select genes of interest? I do not understand, what is that 'geneSel= topDiffGenes' for?

topgo • 886 views
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@lluis-revilla-sancho
Last seen 6 days ago
European Union

The geneSel is the selection of genes from the universe which are the genes provided. Otherwise the topGOdata doesn't know which is the gene set of interest.

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