Question: Bioconductor / COHCAP GitHub Update
gravatar for cwarden45
8 months ago by
United States
cwarden450 wrote:


I downloaded code for the COHCAP Bioconductor SVN repository (, made some changes, and then tried to commit those changes.  However, I got an error message that the SVN repository is locked, so the changes could not be uploaded because of a switch to git.

I have a GitHub account, and I uploaded the COHCAP code (with the latest round of changes) to GitHub:

However, I am not sure how to make this the new Bioconductor repository.  I am trying to follow the instructions available here:

However, if I run the command git remote add upstream, then I get an error message: fatal: Not a git repository.

Can you please help me update the COHCAP Bioconductor repository and understand how this is now managed through GitHub?



ADD COMMENTlink written 8 months ago by cwarden450

Did you run the git remote add command in the package root dir? I see a similar error message when I try to run a git command but I've forgotten to cd into the package directory.

ADD REPLYlink modified 8 months ago • written 8 months ago by Andrzej Oleś680

Thanks for the suggestion - I did need to cd into the COHCAP directory.

I also needed to create a ssh key and submit it to Bioconductor using this form.

ADD REPLYlink modified 7 months ago • written 7 months ago by cwarden450
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