I downloaded code for the COHCAP Bioconductor SVN repository (https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/COHCAP/), made some changes, and then tried to commit those changes. However, I got an error message that the SVN repository is locked, so the changes could not be uploaded because of a switch to git.
I have a GitHub account, and I uploaded the COHCAP code (with the latest round of changes) to GitHub:
However, I am not sure how to make this the new Bioconductor repository. I am trying to follow the instructions available here:
However, if I run the command git remote add upstream firstname.lastname@example.org:packages/COHCAP.git, then I get an error message: fatal: Not a git repository.
Can you please help me update the COHCAP Bioconductor repository and understand how this is now managed through GitHub?