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Question: GEOquery download error
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gravatar for Barah
12 weeks ago by
Barah20
Barah20 wrote:

I have tried to download GEO dataset GSE16146 using GEOquery library. It is a two channel printed array containing 83 samples. My aim is to extract the expression matrix for the 83 samples. The following error occurs-

> library('GEOquery')

>gseGSE16146 <- getGEO('GSE16146', GSEMatrix=TRUE)

https://ftp.ncbi.nlm.nih.gov/geo/series/GSE16nnn/GSE16146/matrix/

Error in function (type, msg, asError = TRUE)  :    Failed to connect to ftp.ncbi.nlm.nih.gov port 443: Timed out

 

Can anyone help?

ADD COMMENTlink modified 12 weeks ago • written 12 weeks ago by Barah20

There are sometimes intermittent connection problems to GEO. Could you try again a few hours after your last try?

ADD REPLYlink written 12 weeks ago by Sean Davis21k
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