Looking for a package to efficiently plot Hi-C contact maps
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changxu.fan ▴ 10
@changxufan-24128
Last seen 7 days ago
United States

Dear community,

I'm interested in the 3D structure of one genomic region (take the MYC locus as an example), and I hope to visually examine this region across as many .hic files as I can collect. It seems laborious and error-prone to open each file on juicebox and navigate to that region (also need to reload gene annotation each time). I was wondering if there is a package to plot Hi-C contact map efficiently (preferably together with gene annotation), so that I can write a loop and plot all the files. Any resources outside of R would also be great!

Thank you!

HiC hicrep HiCcompare • 104 views
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