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Hans
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@hans-24157
Last seen 3.9 years ago
Hello, I have an Issue with mzR in MetaboAnalystR Library.
I followed the instructions on this site
Provided that the 3rd suggestion did not work, I am posting that issue here.
> library(MetaboAnalystR)
MetaboAnalystR 3.0.3 initialized Successfully !
https://github.com/xia-lab/MetaboAnalystR
There were 12 warnings (use warnings() to see them)
> warnings()
Mensagens de aviso:
1: In fun(libname, pkgname) :
mzR has been built against a different Rcpp version (1.0.4.6)
than is installed on your system (1.0.5). This might lead to errors
when loading mzR. If you encounter such issues, please send a report,
including the output of sessionInfo() to the Bioc support forum at
https://support.bioconductor.org/. For details see also
https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue.
2: replacing previous import ‘MSnbase::normalize’ by ‘igraph::normalize’ when loading ‘MetaboAnalystR’
3: replacing previous import ‘data.table::melt’ by ‘reshape::melt’ when loading ‘MetaboAnalystR’
4: replacing previous import ‘igraph::decompose’ by ‘stats::decompose’ when loading ‘MetaboAnalystR’
5: replacing previous import ‘pls::loadings’ by ‘stats::loadings’ when loading ‘MetaboAnalystR’
6: replacing previous import ‘gplots::lowess’ by ‘stats::lowess’ when loading ‘MetaboAnalystR’
7: replacing previous import ‘MSnbase::smooth’ by ‘stats::smooth’ when loading ‘MetaboAnalystR’
8: replacing previous import ‘igraph::spectrum’ by ‘stats::spectrum’ when loading ‘MetaboAnalystR’
9: replacing previous import ‘igraph::groups’ by ‘dplyr::groups’ when loading ‘MetaboAnalystR’
10: replacing previous import ‘reshape::rename’ by ‘dplyr::rename’ when loading ‘MetaboAnalystR’
11: replacing previous import ‘data.table::transpose’ by ‘purrr::transpose’ when loading ‘MetaboAnalystR’
12: replacing previous import ‘reshape::melt’ by ‘reshape2::melt’ when loading ‘MetaboAnalystR’
sessionInfo( )
R version 4.0.3 (2020-10-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19042)
Matrix products: default
locale:
[1] LC_COLLATE=Portuguese_Brazil.1252 LC_CTYPE=Portuguese_Brazil.1252 LC_MONETARY=Portuguese_Brazil.1252 LC_NUMERIC=C
[5] LC_TIME=Portuguese_Brazil.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] MetaboAnalystR_3.0.3
loaded via a namespace (and not attached):
[1] TH.data_1.0-10 fgsea_1.14.0 colorspace_2.0-0 ellipsis_0.3.1 class_7.3-17 siggenes_1.62.0 pls_2.7-3
[8] rstudioapi_0.13 mzR_2.22.0 affyio_1.58.0 bit64_4.0.5 lubridate_1.7.9.2 prodlim_2019.11.13 mvtnorm_1.1-1
[15] mathjaxr_1.0-1 xml2_1.3.2 codetools_0.2-18 splines_4.0.3 ncdf4_1.17 mnormt_2.0.2 doParallel_1.0.16
[22] impute_1.62.0 scrime_1.3.5 TFisher_0.2.0 jsonlite_1.7.1 pROC_1.16.2 caret_6.0-86 vsn_3.56.0
[29] graph_1.66.0 httr_1.4.2 BiocManager_1.30.10 compiler_4.0.3 Matrix_1.2-18 limma_3.44.3 crmn_0.0.21
[36] htmltools_0.5.0 prettyunits_1.1.1 tools_4.0.3 igraph_1.2.6 gtable_0.3.0 glue_1.4.2 affy_1.66.0
[43] reshape2_1.4.4 dplyr_1.0.2 fastmatch_1.1-0 Rcpp_1.0.5 MALDIquant_1.19.3 Biobase_2.48.0 vctrs_0.3.4
[50] multtest_2.44.0 rsm_2.10.2 preprocessCore_1.50.0 nlme_3.1-150 iterators_1.0.13 gbRd_0.4-11 timeDate_3043.102
[57] stringr_1.4.0 gower_0.2.2 rbibutils_1.4 lifecycle_0.2.0 gtools_3.8.2 XML_3.99-0.5 edgeR_3.30.3
[64] zlibbioc_1.34.0 MASS_7.3-53 zoo_1.8-8 scales_1.1.1 ipred_0.9-9 MSnbase_2.14.2 pcaMethods_1.80.0
[71] hms_0.5.3 ProtGenerics_1.20.0 parallel_4.0.3 RBGL_1.64.0 sandwich_3.0-0 RColorBrewer_1.1-2 memoise_1.1.0
[78] gridExtra_2.3 ggplot2_3.3.2 rpart_4.1-15 stringi_1.5.3 reshape_0.8.8 RSQLite_2.2.1 mutoss_0.1-12
[85] S4Vectors_0.26.1 foreach_1.5.1 plotrix_3.7-8 caTools_1.18.0 BiocGenerics_0.34.0 BiocParallel_1.22.0 lava_1.6.8.1
[92] Rdpack_2.1 rlang_0.4.8 pkgconfig_2.0.3 bitops_1.0-6 mzID_1.26.0 lattice_0.20-41 purrr_0.3.4
[99] recipes_0.1.15 bit_4.0.4 tidyselect_1.1.0 plyr_1.8.6 magrittr_1.5 R6_2.5.0 IRanges_2.22.2
[106] gplots_3.1.0 generics_0.1.0 multcomp_1.4-15 DBI_1.1.0 withr_2.3.0 pillar_1.4.6 sn_1.6-2
[113] survival_3.2-7 nnet_7.3-14 tibble_3.0.4 crayon_1.3.4 KernSmooth_2.23-18 tmvnsim_1.0-2 progress_1.2.2
[120] locfit_1.5-9.4 grid_4.0.3 data.table_1.13.2 blob_1.2.1 ModelMetrics_1.2.2.2 metap_1.4 digest_0.6.27
[127] numDeriv_2016.8-1.1 stats4_4.0.3 munsell_0.5.0
Thank you all in advance for helping.