error in installation of 'org.Hs.eg.db'
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Eliza • 0
@eliza-24309
Last seen 9 months ago

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Code should be placed in three backticks as shown below


# include your problematic code here with any corresponding output 
BiocManager::install('org.Hs.eg.db')
# please also include the results of running the following in an R session 
Bioconductor version 3.12 (BiocManager 1.30.10), R 4.0.2 (2020-06-22)
Installing package(s) 'org.Hs.eg.db'
installing the source package ‘org.Hs.eg.db’

trying URL 'https://bioconductor.org/packages/3.12/data/annotation/src/contrib/org.Hs.eg.db_3.12.0.tar.gz'
Content type 'application/x-gzip' length 83225518 bytes (79.4 MB)
downloaded 79.4 MB

* installing *source* package 'org.Hs.eg.db' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error: unexpected string constant in:
"suppressPackageStartupMessages(.getRequiredPackages(quietly = TRUE))
tools:::makeLazyLoading("org.Hs.eg.db", '"
Execution halted
ERROR: lazy loading failed for package 'org.Hs.eg.db'
* removing 'C:/Users/Eliza's PC/Documents/R/win-library/4.0/org.Hs.eg.db'

The downloaded source packages are in
    ‘C:\Users\Eliza's PC\AppData\Local\Temp\RtmpMBsh5S\downloaded_packages’
Installation path not writeable, unable to update packages: codetools, KernSmooth, MASS, mgcv, nlme, survival
Old packages: 'xfun'
Update all/some/none? [a/s/n]: 

sessionInfo( )
proteomics GenomicSequence • 246 views
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1
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Hello, what is the output of BiocManager::valid()?

The problem could also be the space and/or apostrophe in the installation path.

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In addition to what Kevin asked, can you confirm you have write access to: C:/Users/Eliza's PC/Documents/R/win-library/4.0/

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