Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
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@hclimente
Last seen 6 months ago

Hi!

I have issues installing my own package, martini, in Linux, and only in Linux. I use continuous integration via Github actions (Linux, Windows, macOS). R CMD check succeeds in all platforms, but BiocCheck fails in Linux with the following message (the full output is available here):

  ** byte-compile and prepare package for lazy loading
  ERROR: lazy loading failed for package ‘martini’
  * removing ‘/tmp/RtmpTWnjOi/filea213c9c2f3e/lib/martini’

Installation works fine on my own Linux machines. So I am clueless regarding how to debug this error. Does anyone have any suggestions?

Here is the session info of the virtual machine:

Bioconductor version 3.12 (BiocManager 1.30.10), ?BiocManager::install for help
R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04 LTS

Matrix products: default
BLAS/LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.8.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=C
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] BiocManager_1.30.10

loaded via a namespace (and not attached):
[1] compiler_4.0.3
BiocCheck Install martini • 287 views
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If this is about package development (seems like it is...) then it should be posted on the bioc-devel mailing list. I think it would be very helpful to arrive at a more reproducible example, maybe using the Bioconductor docker image?

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You are right, thanks.

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