Can anyone suggest me a way or preferably a script to adjust for blood cell composition in Methylation EPIC array datasets using ChAMP R package.
I see ChAMP software can do it for 450K and 27 K methylation array (champ.refbase). But I did not observe anything for EPIC/850K.
I also noticed a bioconductor package FlowSorted.Blood.EPIC can import data for EPIC:Blood but how to adjust my methylation array data with that.
So if anyone has suggestions , please help.