I am unable to load data "pasillaGenes" in R. Please see below
> data("pasillaGenes") Warning: namespace ‘DESeq’ is not available and has been replaced by .GlobalEnv when processing object ‘pasillaGenes’ Loading required package: DESeq Error in .requirePackage(package) : unable to find required package ‘DESeq’ In addition: Warning message: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘DESeq’
I then proceeded to install DESeq but then the below returned.
> BiocManager::install("DESeq") Bioconductor version 3.12 (BiocManager 1.30.10), R 4.0.3 (2020-10-10) Installing package(s) 'DESeq' Warning message: package ‘DESeq’ is not available for this version of R
FYI, I already had DESeq2 installed. Please also kindly see my session info below.
> sessionInfo() R version 4.0.3 (2020-10-10) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Big Sur 10.16 Matrix products: default LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib locale:  en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages:  parallel stats4 stats graphics grDevices utils datasets methods base other attached packages:  DESeq2_1.30.0 SummarizedExperiment_1.20.0 Biobase_2.50.0  MatrixGenerics_1.2.0 matrixStats_0.57.0 GenomicRanges_1.42.0  GenomeInfoDb_1.26.2 IRanges_2.24.1 S4Vectors_0.28.1  BiocGenerics_0.36.0 pasilla_1.18.0
Thank you so much in advance for any help!