GO.db package can't be installed
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Enrico • 0
@Enrico-24472
Last seen 5 months ago

Hello, I am trying to install the package GO.db. When installing, I get the following error:


    Error in file(filename, "r", encoding = encoding) : 
      cannot open the connection
    Calls: source -> file
    In addition: Warning message:
    In file(filename, "r", encoding = encoding) :
      cannot open file 'renv/activate.R': No such file or directory
    Execution halted

I am using renv in some other projects, but I had the same error when creating a new project from scratch (without renv), so I am not sure why this error keeps popping up. This is the sessioninfo:

R version 3.6.3 (2020-02-29)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Catalina 10.15.5

Matrix products: default
BLAS:   /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] BiocManager_1.30.10 compiler_3.6.3      tools_3.6.3

Thank you in advance.

install GO.db • 275 views
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When you say renv, I presume that you are referring to this? - https://rstudio.github.io/renv/articles/renv.html

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yes, sorry for not clearing that up, it is a package to handle virtual environments (formerly known as "packrat")

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This question may therefore be more suited to the RStudio forum - not sure. The error message doesn't indicate anything specific to GO.db, and instead implicates renv

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Is there an earlier message about 'Timeout reached' while trying to download GO.db? Try options(timeout = 300L).

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