Using Deseq2 for RNA-seq analysis of 4 different groups of cells
Entering edit mode
yonatan • 0
Last seen 5 days ago

Hello, my name is Jonathan I'm new to R and to RNA-seq. I have a question regarding a project I'm working on. I want to compare differential expression of RNA within 4 different groups of cells (different tumors). can I use DESEQ2 for that even though the cell are not paired or is there any other tool in order to do so? if someone can link me a manual for that kind of analysis I would be grateful. thank you for your support, Jonathan.

DESeq2 RNASeq • 36 views
Entering edit mode
ATpoint • 390
Last seen 2 minutes ago

Hi, since this is not a technical question that requires the developers expertise I suggest you post this over at and add some background, for example the number of replicates per group, and what these samples are. In general the DESeq2 vignette is a great place to start.


Login before adding your answer.

Similar Posts
Loading Similar Posts
Help About
Access RSS

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.3