adklts • 0

@adklts-21974

Last seen 4 days ago

Good afternoon. In my Dockerfile, I try to upload Bioconductor packages for a Shiny app in the following way

RUN Rscript -e 'install.packages("BiocManager")'

RUN Rscript -e 'BiocManager::install("rtracklayer")'

During the installation, I do not receive any kind of issue. But after when I try to run the app in Docker I receive a message that does not exist the packages of Bioconductor. Could anybody help me, please?

Konstantinos Yeles • 40

@konstantinos-yeles-8961

Last seen 14 hours ago

University of Salerno, Salerno, Italy

Hello, adklts My way to do the installation of packages in a docker is like this:

    FROM bioconductor/bioconductor_docker:devel

    RUN apt-get update
    RUN R -e 'BiocManager::install(ask = F)' && R -e 'BiocManager::install(c("magick", \
    "tidyverse", "vroom", "VennDiagram", "PerformanceAnalytics", \
    "GO.db", "corrplot", ask = F))' && R -e 'tinytex::install_tinytex()'

Hope it helps!