SingleR and SCTransform
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amel.zulji • 0
@amelzulji-24297
Last seen 8 weeks ago

Hi folks,

How SingleR performs on SCTransformed data? Particularly, I want to transfer the cell annotations from SCTransformed data to SCTransformed data.

Thank you in advance for your help. Amel Zulji

SingleR • 104 views
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Aaron Lun ★ 26k
@alun
Last seen 2 hours ago
The city by the bay

Probably best to run it on the raw counts, see the discussion here.

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