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Recent ...
Replies
Answer: Error retrieving ensembl gene id using biomaRt...
by
Mike Smith
★
6.5k
I think you have the assignment operator (`<-`) the wrong way round. It should be `df_biomrt_tmp <- getBM(...`
Answer: Error retrieving ensembl gene id using biomaRt...
by
James W. MacDonald
65k
I can't reproduce.
```
> library(biomaRt)
Warning message:
package 'biomaRt' was built under R version 4.3.2
> library(org.Hs.eg.db…
Comment: DESeq2 setting significant p-value
by
Michael Love
41k
```
> counts <- matrix(1:16, ncol=4, dimnames=list(letters[1:4],NULL))
> coldata <- data.frame(x=1:4)
> DESeqDataSetFromMatrix(counts, cold…
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
Right, I was suggesting subsetting as a valid choice for "treatment and control samples at each timepoint"
Comment: DESeq filtering specific to contrasts
by
Carlin95
•
0
Fair enough, I guess it depends on the comparison being made, right? If one was interested in a feature comparing Timepoint A vs B, then it…
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