0
votes
0
replies
19
views
featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_get_next_read_BIN: Assertion `l_name < 256' failed. Aborted (core dumpe…
metaMSdata
10 hours ago shuwangxinze1996 • 0
0
votes
1
reply
65
views
limma-voom: Calculate the log-fold change in gene expression within a sample
limma RNASeq voom
updated 14 hours ago by 50k • written 15 hours ago by • 0
3
votes
3
replies
95
views
DESeq2 - dispersion estimation when there is none
DESeq2
updated 1 hour ago by 41k • written 22 hours ago by • 0
0
votes
1
reply
41
views
minfi::read.metharray.exp
minfiData minfi
updated 6 hours ago by ▴ 770 • written 23 hours ago by • 0
0
votes
3
replies
119
views
Error for AnnotationForge makeOrgPackageFromNCBI function
OrgDb AnnotationForge
updated 1 hour ago by 65k • written 1 day ago by • 0
0
votes
2
replies
82
views
Trying to use enrichGO
clusterProfiler GenomicDistributionsData KEGG
1 day ago • updated 13 hours ago fernanda.backsouza • 0
1
vote
4
replies
109
views
Error EPICv2 ChAMP
ChAMPdata IlluminaHumanMethylationEPICv2anno.20a1.hg38 ChAMP
updated 21 hours ago by 65k • written 4 days ago by • 0
3
votes
6
replies
297
views
FilterByExpr low counts with small sample size
edgeR
5 days ago • updated 22 hours ago Jonathan ▴ 10
0
votes
7
replies
225
views
Methylation Analysis experiment design using Limma
DNAMethylation limma methylationArrayAnalysis
6 days ago • updated 5 hours ago hortense96 • 0
1
vote
2
replies
903
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate Gviz
updated 12 hours ago by ▴ 170 • written 13 months ago by ▴ 10
6
votes
16
replies
2.2k
views
DESeq2 a lot of genes showing up as differentially expressed that only have 1 sample with any expression
deseq2
updated 11 minutes ago by 41k • written 4.6 years ago by ▴ 10
5
votes
8
replies
8.7k
views
Limma design with continuous and categorical covariates
limma batch effect covariates microarray
updated 5 hours ago by • 0 • written 7.7 years ago by ▴ 30
12 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Michael Love 41k
I don't really have any additional suggestion here.
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0
Dear Michael, I tried all three ways (the orIginal, increasing the number of required samples,and subsetting (the countdata and metadata be…
Comment: DESeq2 - dispersion estimation when there is none by Michael Love 41k
The red line does assume that shape but the fact the black points show that pattern is discussed in the 2014 paper. > Some caution is warr…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k
I don't really follow what you are saying. All you have to do is delete the NCBI.sqlite db and *re-run the script exactly as you did above.…
Comment: Methylation Analysis experiment design using Limma by hortense96 • 0
Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…
Votes
Comment: DESeq2 - dispersion estimation when there is none
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
Answer: OrgDb for maize
Answer: DESeq2 - dispersion estimation when there is none
Comment: Cannabis and KEGGgraph
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