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How to retrieve gene ontology GO class?
GO.db
goTools
just now
Bann13
• 0
0
votes
0
replies
8
views
Citation for edgeR user guide
edgeR
2 hours ago
k___
▴ 30
1
vote
0
replies
15
views
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
DESeq2
3 hours ago
i.sudbery
▴ 40
0
votes
7
replies
598
views
News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
7 weeks ago • updated 3 hours ago
shepherl
3.8k
1
vote
1
reply
30
views
Cannabis OrgDb
KEGGgraph
org.Cs.eg.db
clusterProfiler
KEGG
AnnotationHubSoftware
updated 4 hours ago by
James W. MacDonald
65k • written 5 hours ago by
fernanda.backsouza
▴ 10
0
votes
0
replies
18
views
DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
5 hours ago
Aaliya
• 0
0
votes
0
replies
17
views
News:
Interested in the analysis of Spatial Omics data?
tidySpatialExperiment
SpatialExperiment
MoleculeExperiment
6 hours ago
info
▴ 10
1
vote
3
replies
67
views
minfi::read.metharray.exp
minfiData
minfi
1 day ago • updated 1 hour ago
clacarion
• 0
0
votes
0
replies
25
views
featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_get_next_read_BIN: Assertion `l_name < 256' failed. Aborted (core dumpe…
metaMSdata
17 hours ago
shuwangxinze1996
• 0
1
vote
2
replies
908
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate
Gviz
updated 18 hours ago by
Tim Peters
▴ 170 • written 13 months ago by
jose.ramirez1
▴ 10
0
votes
1
reply
70
views
limma-voom: Calculate the log-fold change in gene expression within a sample
limma
RNASeq
voom
updated 21 hours ago by
Gordon Smyth
50k • written 22 hours ago by
taur.vil
• 0
3
votes
3
replies
125
views
DESeq2 - dispersion estimation when there is none
DESeq2
updated 7 hours ago by
Michael Love
41k • written 1 day ago by
WardDeb
• 0
0
votes
3
replies
137
views
Error for AnnotationForge makeOrgPackageFromNCBI function
OrgDb
AnnotationForge
updated 8 hours ago by
James W. MacDonald
65k • written 2 days ago by
Gayatri
• 0
1
vote
11
replies
160
views
Trying to use enrichGO
clusterProfiler
GenomicDistributionsData
KEGG
2 days ago • updated 4 hours ago
fernanda.backsouza
▴ 10
0
votes
7
replies
230
views
Methylation Analysis experiment design using Limma
DNAMethylation
limma
methylationArrayAnalysis
6 days ago • updated 12 hours ago
hortense96
• 0
6
votes
16
replies
2.2k
views
DESeq2 a lot of genes showing up as differentially expressed that only have 1 sample with any expression
deseq2
updated 7 hours ago by
Michael Love
41k • written 4.6 years ago by
hsbio
▴ 10
5
votes
8
replies
8.7k
views
Limma design with continuous and categorical covariates
limma
batch effect
covariates
microarray
updated 12 hours ago by
hortense96
• 0 • written 7.7 years ago by
dmcleanuk
▴ 30
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Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Answer: List of Deprecated Packages for Bioc3.19
by
shepherl
3.8k
singleCellTK has been fixed and will remain in Bioconductor
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Votes
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
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