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1.9k
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0
28
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43
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5.6k
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70
16
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40
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38
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0
25
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37
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780
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780
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490
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980
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10
44
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130
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160
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Recent ...
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Answer: regression analysis for epic array methylation data using limma
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Which package do you intend to use ? There are many tutorials in packages vignette that show you how to perform differential methylation an…
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I believe this question is not related to any Bioconductor package, I think the only solution to this question is to search yourself in Pub…
Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
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Upgrading the package solved the issue, thanks!
Answer: Warnings when using "ashr" in lfcshrinkage for DESeq2
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The error comes from the `mixsqp` package, see https://github.com/stephens999/ashr/issues/131. Upgrading the package to the most recent 0.3…
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Thanks for the suggestion.
I ran the following filtering criteria:
```
keep <- rowSums(counts(dds) >= 10) >= 5
dds <- dds[keep,]
```
It ga…
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