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7.0 years ago AurelieMLB ▴ 50
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updated 2.8 years ago by • 0 • written 5.0 years ago by 37k
10
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updated 7.0 years ago by 37k • written 7.0 years ago by ▴ 40
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updated 7.2 years ago by ▴ 10 • written 7.2 years ago by ▴ 70
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updated 7.3 years ago by ▴ 600 • written 7.3 years ago by ▴ 20
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updated 10 weeks ago by 37k • written 5.9 years ago by ▴ 20
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package DESeq2 installation with R.
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updated 11 months ago by 37k • written 4.2 years ago by • 0
1,000 results • Page 1 of 20
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Comment: CPM after RUVseq by James W. MacDonald 59k
Also, you might be confused about something. CPM is counts/million counts, which *uses library size to scale normalize* and logCPM is just…
Comment: CPM after RUVseq by James W. MacDonald 59k
You shouldn't use CPM or logCPM for any of the steps! To use `RUVr` you need to fit a preliminary model using `edgeR`, which takes counts a…
Comment: CPM after RUVseq by Jess • 0
Thank you James! It hadn't occurred to me to input CPM rather than logCPM which is why my df$NormalizedCounts didn't exceed 17ish in valu…
Answer: RPX PXDataset error by Laurent Gatto 1.5k
- From the URL in the error, it looks like you have the latest (or a recent) `rpx` version. It is generally recommended to add the output o…
Answer: Package name already exists due to previous issue by shepherl 3.1k
This has been resolved. There needed to be a manual intervention by the core team to remove the old issue from the issue tracker database.…
Votes
Answer: CPM after RUVseq
Comment: Merging two plated in R
Answer: Merging two plated in R
Answer: Merging two plated in R
A: Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
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