14
votes
6
answers
1.7k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 23 months ago by florian.noack60 • updated 3 months ago by Rory Stark2.3k
3
votes
1
answer
404
views
6 follow
1
answer
3
votes
1
answer
1.4k
views
5 follow
1
answer
DeSeq2 - hill–shaped histogram of pvalues
deseq2 pvalue histogram written 2.5 years ago by deut1370 • updated 2.5 years ago by Bernd Klaus480
2
votes
0
answers
185
views
5 follow
0
answers
3
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2
answers
999
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5 follow
2
answers
11
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1
answer
453
views
7 follow
1
answer
How to remove more than two batches in my data-sets
rnaseq limma removebatcheffect() written 19 months ago by yi.huang30 • updated 19 months ago by Gordon Smyth32k
5
votes
0
answers
599
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5 follow
0
answers
28
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4
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1.7k
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10 follow
4
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13
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2
answers
1.3k
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8 follow
2
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2
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0
answers
393
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5 follow
0
answers
3
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1
answer
1.2k
views
5 follow
1
answer
Using DESeq2: experimental design and extracting results
deseq deseq2 written 3.7 years ago by bio200160 • updated 3.7 years ago by Michael Love16k
6
votes
2
answers
3.5k
views
8 follow
2
answers
remove microarray batch effects using Limma
microarray written 7.3 years ago by Xie, Zhi NIH/NHLBI [E]60 • updated 4 months ago by Gordon Smyth32k
7
votes
2
answers
3.3k
views
5 follow
2
answers
WGCNA: overlapping colors in plotDendroAndColors?
network wgcna plotdendroandcolors written 3.4 years ago by Keith Hughitt100 • updated 3.4 years ago by Peter Langfelder1.4k
17
votes
4
answers
3.6k
views
10 follow
4
answers
Removing continuous covariate effects in limma analysis
microarray limma written 2.9 years ago by Pauly Lin80 • updated 5 months ago by Gordon Smyth32k
8
votes
1
answer
5.0k
views
8 follow
1
answer
DESEq2 comparison with mulitple cell types under 2 conditions
deseq2 multiple factor design written 2.8 years ago by kmu00430 • updated 2.8 years ago by Michael Love16k
7
votes
0
answers
782
views
5 follow
0
answers
News: Announcing Docker containers for Bioconductor
news docker written 3.1 years ago by Dan Tenenbaum ♦♦ 8.2k
7
votes
1
answer
2.7k
views
8 follow
1
answer
Renaming the seqlevels in a transcript database from GenomicFeatures
genomicfeatures written 3.7 years ago by Fong Chun Chan320 • updated 3.7 years ago by Sonali Arora370
7
votes
1
answer
3.5k
views
7 follow
1
answer
Removing batch effects with sva and combat using the sva package
regression limma sva written 6.2 years ago by Jeff Leek500 • updated 6.2 years ago by Andrew Teschendorff60
6
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0
answers
708
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5 follow
0
answers
9
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2
answers
4.6k
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10 follow
2
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8
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2
answers
454
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6 follow
2
answers
2
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2
answers
327
views
2
answers
3
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2
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928
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2
answers
Run featureCounts in isoform/transcript level in Rsubread
rsubread written 24 months ago by Likai Mao10 • updated 24 months ago by Wei Shi2.7k
2
votes
1
answer
254
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1
answer
5
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1
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1.6k
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1
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