13
votes
2
answers
19k
views
8 follow
2
answers
heatmap.2() get matrix after hierarchical clustering
clustering written 5.7 years ago by Guest User12k • updated 5.7 years ago by Thomas Girke1.6k
6
votes
2
answers
4.3k
views
8 follow
2
answers
remove microarray batch effects using Limma
microarray written 7.7 years ago by Xie, Zhi NIH/NHLBI [E]60 • updated 9 months ago by Gordon Smyth34k
13
votes
6
answers
6.9k
views
8 follow
6
answers
16
votes
2
answers
8.2k
views
8 follow
2
answers
Mapping genome regions to gene symbols
gene symbol tcga cnv coordinate written 3.2 years ago by NS10 • updated 3.2 years ago by pshannon80
24
votes
3
answers
2.6k
views
8 follow
3
answers
voom for spectral counts
proteomics limma massspectrometry voom spectral counts written 3.5 years ago by Ben Neely40 • updated 3.5 years ago by Gordon Smyth34k
11
votes
2
answers
958
views
8 follow
2
answers
10
votes
2
answers
2.6k
views
8 follow
2
answers
CAMERA error: $ operator not defined for this S4 class
camera software error written 3.0 years ago by scott.walmsley60 • updated 3.0 years ago by ckuhl20
13
votes
2
answers
1.6k
views
8 follow
2
answers
13
votes
2
answers
2.0k
views
8 follow
2
answers
19
votes
2
answers
2.0k
views
8 follow
2
answers
0
votes
1
answer
621
views
7 follow
1
answer
9
votes
2
answers
3.3k
views
7 follow
2
answers
Deseq2 error estimating size factors -- zeros in count matrix
deseq2 estimatesizefactors written 2.5 years ago by ssabri20 • updated 2.5 years ago by Michael Love18k
8
votes
3
answers
2.4k
views
7 follow
3
answers
Pathview: *** caught segfault *** cause 'memory not mapped'
pathview segfault written 2.6 years ago by user3188830 • updated 24 months ago by redpick1340
19
votes
2
answers
3.5k
views
7 follow
2
answers
Usability of ERCC spike-ins in standard RNAseq experiments
rnaseq deseq2 ercc written 21 months ago by mbeckste20 • updated 21 months ago by Simon Anders3.5k
8
votes
2
answers
534
views
7 follow
2
answers
6
votes
3
answers
1.9k
views
7 follow
3
answers
6
votes
1
answer
1.8k
views
7 follow
1
answer
biomaRt: error using useDataset or useMart
biomart software error usemart usedataset written 7 months ago by lpsantamaria40 • updated 7 months ago by Mike Smith2.8k
17
votes
2
answers
1.7k
views
7 follow
2
answers
Limma camera function never gives any differentially expressed gene sets
limma written 3.0 years ago by chris86380 • updated 11 months ago by misterrandyclark0
13
votes
6
answers
1.9k
views
7 follow
6
answers
6
votes
0
answers
1.1k
views
7 follow
0
answers
9
votes
2
answers
8.8k
views
7 follow
2
answers
deseq2 filter the low counts
deseq2 lowcount written 3.4 years ago by aristotele_m20 • updated 21 months ago by pkachroo10
0
votes
1
answer
762
views
7 follow
1
answer
more stupid *Ranges questions...
transcription chippeakanno genomicranges written 6.8 years ago by Tim Triche4.2k • updated 6.8 years ago by Michael Lawrence10k
0
votes
1
answer
701
views
7 follow
1
answer
granges() method for GenomicRanges objects akin to ranges()...
written 4.2 years ago by Tim Triche4.2k • updated 4.2 years ago by Jeff Johnston90
1
vote
2
answers
1.7k
views
7 follow
2
answers
Problem installing BSgenome.Hsapiens.UCSC.hg19
software error written 2.9 years ago by mhwaldron10410 • updated 2.7 years ago by Arne Muller20
11
votes
1
answer
529
views
7 follow
1
answer
How to remove more than two batches in my data-sets
rnaseq limma removebatcheffect() written 24 months ago by yi.huang30 • updated 24 months ago by Gordon Smyth34k
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