13
votes
2
answers
15k
views
8 follow
2
answers
heatmap.2() get matrix after hierarchical clustering
clustering written 5.1 years ago by Guest User12k • updated 5.1 years ago by Thomas Girke1.6k
24
votes
3
answers
2.1k
views
8 follow
3
answers
voom for spectral counts
proteomics limma massspectrometry voom spectral counts written 2.8 years ago by Ben Neely40 • updated 2.8 years ago by Gordon Smyth32k
6
votes
2
answers
3.2k
views
8 follow
2
answers
remove microarray batch effects using Limma
microarray written 7.1 years ago by Xie, Zhi NIH/NHLBI [E]60 • updated 4 weeks ago by Gordon Smyth32k
13
votes
2
answers
5.2k
views
8 follow
2
answers
Mapping genome regions to gene symbols
gene symbol tcga cnv coordinate written 2.6 years ago by NS10 • updated 2.5 years ago by pshannon80
10
votes
2
answers
2.2k
views
8 follow
2
answers
CAMERA error: $ operator not defined for this S4 class
camera software error written 2.4 years ago by scott.walmsley60 • updated 2.4 years ago by ckuhl20
9
votes
1
answer
1.8k
views
7 follow
1
answer
0
votes
2
answers
512
views
7 follow
2
answers
Wow, what have I done
written 10.0 years ago by Loren Engrav1000 • updated 10.0 years ago by Marcus G. Daniels30
9
votes
2
answers
2.3k
views
7 follow
2
answers
Deseq2 error estimating size factors -- zeros in count matrix
deseq2 estimatesizefactors written 22 months ago by ssabri10 • updated 22 months ago by Michael Love14k
7
votes
1
answer
3.3k
views
7 follow
1
answer
Removing batch effects with sva and combat using the sva package
regression limma sva written 5.9 years ago by Jeff Leek490 • updated 5.9 years ago by Andrew Teschendorff60
0
votes
3
answers
470
views
7 follow
3
answers
GOStats/RBGL installation error
rbgl gostats written 10.1 years ago by Nicolas Servant220 • updated 10.1 years ago by Yongde Bao170
2
votes
4
answers
2.2k
views
7 follow
4
answers
Minfi error in reading Basename column
minfi methylation written 2.2 years ago by parap0 • updated 13 months ago by SplittingInfinity0
17
votes
2
answers
1.3k
views
7 follow
2
answers
Limma camera function never gives any differentially expressed gene sets
limma written 2.3 years ago by chris86320 • updated 3 months ago by misterrandyclark0
0
votes
1
answer
500
views
7 follow
1
answer
Job offer at EMBL Heidelberg
sequencing written 8.8 years ago by delhomme@embl.de1.2k • updated 8.8 years ago by Arteaga-Salas, Jose M20
3
votes
1
answer
3.1k
views
7 follow
1
answer
support for EPIC methylation arrays in minfi
minfi written 20 months ago by Kasper Daniel Hansen6.3k • updated 15 months ago by line.heylen0
6
votes
0
answers
906
views
7 follow
0
answers
11
votes
6
answers
1.5k
views
7 follow
6
answers
11
votes
1
answer
405
views
7 follow
1
answer
How to remove more than two batches in my data-sets
rnaseq limma removebatcheffect() written 16 months ago by yi.huang30 • updated 16 months ago by Gordon Smyth32k
0
votes
1
answer
883
views
7 follow
1
answer
Alignment viewer?
go written 7.6 years ago by Erik Wright210 • updated 7.6 years ago by Thomas Girke1.6k
6
votes
3
answers
1.6k
views
7 follow
3
answers
0
votes
1
answer
538
views
7 follow
1
answer
granges() method for GenomicRanges objects akin to ranges()...
written 3.5 years ago by Tim Triche4.2k • updated 3.5 years ago by Jeff Johnston90
10
votes
3
answers
8.7k
views
7 follow
3
answers
10
votes
2
answers
2.5k
views
7 follow
2
answers
using duplicateCorrelation with limma+voom for RNA-seq data
limma voom written 3.5 years ago by John Blischak120 • updated 2.5 years ago by Gordon Smyth32k
0
votes
1
answer
562
views
7 follow
1
answer
more stupid *Ranges questions...
transcription chippeakanno genomicranges written 6.2 years ago by Tim Triche4.2k • updated 6.2 years ago by Michael Lawrence9.8k
0
votes
5
answers
984
views
7 follow
5
answers
package 'ChAMP' demo/test code fails at champ.CNA()
software error written 2.8 years ago by Hamid Bolouri90 • updated 9 months ago by Yuan Tian70
0
votes
1
answer
485
views
7 follow
1
answer
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