18
votes
2
answers
3.2k
views
8 follow
2
answers
Confidence intervals on edgeR logFC
edger statistics confidence interval written 3.6 years ago by ri.lars40 • updated 2.0 years ago by nwvidal0
14
votes
2
answers
7.1k
views
8 follow
2
answers
Mapping genome regions to gene symbols
gene symbol tcga cnv coordinate written 3.0 years ago by NS10 • updated 3.0 years ago by pshannon80
8
votes
1
answer
5.8k
views
8 follow
1
answer
DESEq2 comparison with mulitple cell types under 2 conditions
deseq2 multiple factor design written 3.0 years ago by kmu00430 • updated 3.0 years ago by Michael Love17k
6
votes
2
answers
3.9k
views
8 follow
2
answers
remove microarray batch effects using Limma
microarray written 7.5 years ago by Xie, Zhi NIH/NHLBI [E]60 • updated 6 months ago by Gordon Smyth33k
11
votes
2
answers
886
views
8 follow
2
answers
24
votes
3
answers
2.4k
views
8 follow
3
answers
voom for spectral counts
proteomics limma massspectrometry voom spectral counts written 3.2 years ago by Ben Neely40 • updated 3.2 years ago by Gordon Smyth33k
10
votes
2
answers
2.5k
views
8 follow
2
answers
CAMERA error: $ operator not defined for this S4 class
camera software error written 2.8 years ago by scott.walmsley60 • updated 2.8 years ago by ckuhl20
13
votes
6
answers
6.5k
views
8 follow
6
answers
21
votes
2
answers
24k
views
7 follow
2
answers
conceptual question about FDR, FDR adjusted p-value and q-value
qvalue fdr written 5.3 years ago by Jack Luo340 • updated 18 months ago by Gordon Smyth33k
0
votes
2
answers
694
views
7 follow
2
answers
Wow, what have I done
written 10.4 years ago by Loren Engrav1.0k • updated 10.4 years ago by Marcus G. Daniels30
0
votes
1
answer
768
views
7 follow
1
answer
How to plot NGS data?
go bsgenome geneplotter process genomes written 6.2 years ago by Bernd Jagla30 • updated 6.2 years ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
1.3k
views
7 follow
1
answer
6
votes
0
answers
1.0k
views
7 follow
0
answers
9
votes
1
answer
2.4k
views
7 follow
1
answer
9
votes
1
answer
1.1k
views
7 follow
1
answer
looping through a GRangesList object
genomicranges grangeslist written 2.3 years ago by Simon Anders3.4k • updated 2.3 years ago by Julian Gehring1.3k
17
votes
2
answers
1.6k
views
7 follow
2
answers
Limma camera function never gives any differentially expressed gene sets
limma written 2.8 years ago by chris86380 • updated 8 months ago by misterrandyclark0
11
votes
5
answers
5.9k
views
7 follow
5
answers
RNA-Seq, generate batch-free count matrix
edger sva written 3.8 years ago by Brian Haas60 • updated 3.5 years ago by Gordon Smyth33k
0
votes
5
answers
1.1k
views
7 follow
5
answers
package 'ChAMP' demo/test code fails at champ.CNA()
software error written 3.3 years ago by Hamid Bolouri90 • updated 15 months ago by Yuan Tian80
8
votes
3
answers
2.0k
views
7 follow
3
answers
Pathview: *** caught segfault *** cause 'memory not mapped'
pathview segfault written 2.4 years ago by user3188830 • updated 21 months ago by redpick1340
3
votes
1
answer
3.6k
views
7 follow
1
answer
support for EPIC methylation arrays in minfi
minfi written 2.1 years ago by Kasper Daniel Hansen6.3k • updated 20 months ago by line.heylen10
1
vote
2
answers
1.6k
views
7 follow
2
answers
Problem installing BSgenome.Hsapiens.UCSC.hg19
software error written 2.6 years ago by mhwaldron10410 • updated 2.5 years ago by Arne Muller20
11
votes
1
answer
487
views
7 follow
1
answer
How to remove more than two batches in my data-sets
rnaseq limma removebatcheffect() written 21 months ago by yi.huang30 • updated 21 months ago by Gordon Smyth33k
0
votes
1
answer
1.0k
views
7 follow
1
answer
Alignment viewer?
go written 8.0 years ago by Erik Wright210 • updated 8.0 years ago by Thomas Girke1.6k
0
votes
1
answer
637
views
7 follow
1
answer
granges() method for GenomicRanges objects akin to ranges()...
written 4.0 years ago by Tim Triche4.2k • updated 4.0 years ago by Jeff Johnston90
11
votes
6
answers
1.8k
views
7 follow
6
answers
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