Latest Posts

votes

answers

views

answers

How can I define which samples are controls and which samples are cases in ChAMP

champ champ.dmp cases controls references written 7 days ago by yuabrahamliu • 0

votes

answers

views

answers

GenomicRanges based on indices or more conditions, and add column from match

iranges genomicranges findoverlaps written 8 days ago by francesca casalino • 50

votes

answers

views

answers

Problem installing flipflop 1.18.0 due to error compiling align.cpp

flipflop written 8 days ago by hjshayya254 • 0

votes

answers

views

answers

WGCNA chooseOneHubInEachModule Error

wgcna chooseonehubineachmodule written 8 days ago by sharvari gujja • 20

votes

answers

views

answers

Is there a package that help me draw copy number alteration for each chromosome?

copynumber alteration written 8 days ago by Arman Shahrisa • 10

votes

answers

views

answers

Job: Software Development Engineer at Fred Hutch (Seattle, WA)

job R software engineer written 10 days ago by jkim2345 • 0

votes

answers

views

answers

(Closed) Subscript error from TSS proximity function

diffbind s4vectors function tss written 11 days ago by rbronste • 60 • updated 10 days ago by Michael Love ♦ 19k

votes

answers

views

answers

CouplingSet error in MeDIPS

medips coupling set error written 11 days ago by saripalligautam86 • 10

votes

answers

views

answers

Sva for tumor cellular heterogeneity

limma sva written 11 days ago by chp950 • 0

votes

answers

views

answers

topGO analysis runTest: non-numeric argument to binary operator

topgo written 11 days ago by Dave Th. • 0

vote

answers

views

answers

CRImage lacking functions presented in the manual

crimage createtrainingset written 12 days ago by valleem • 0

votes

answers

views

answers

error: getCTSS from CAGEexp class with removeFirstG=TRUE

cager written 12 days ago by Pengcheng Yang • 50

votes

answers

views

answers

BHC time series cluster

time series cluster using bch written 12 days ago by shabnam.salimi.m.d • 0

vote

answers

views

answers

(Closed) error in analyzeAlternativeSplicing or analyzeIntronRetention, IsoformSwitchAnalyzeR

isoformswitchanalyzer written 13 days ago by Ou, Jianhong • 1.1k

votes

answers

views

answers

How to extract SNPs from multiple alignment fasta file?

snp fasta tutorial multiple sequence alignment written 13 days ago by pltbiotech_tkarthi • 0 • updated 13 days ago by Martin Morgan ♦♦ 22k

votes

answers

views

answers

Use ChAMP to Find Differential Methylation Regions (DMR)

champ dmr champ.dmr written 13 days ago by yuabrahamliu • 0

votes

answers

125

views

answers

Error while installing Phyloseq using biocLite

phyloseq bioclite install error written 14 days ago by khp • 30

votes

answers

views

answers

master gene list for pathway analysis

sigpathway pathway analysis genesets_entrezgeneids.rdata written 14 days ago by maria • 0

votes

answers

views

answers

How to use DEXSeq processing whole genome (~650k exons/counting bins) and many samples? Can I process per 100 genes (or more) a batch until it covers all exons?

dexseq written 14 days ago by slowsmile820 • 0

votes

answers

views

answers

Creation of qPCRset in R for HtqPCR

htqpcr R bioconductor qpcrset object written 15 days ago by mohammedtoufiq91 • 0

votes

answers

views

answers

MLInterfaces package problem

bioconductor written 15 days ago by wenxue.li • 0

votes

answers

views

answers

Add aa sites altered by SNPs

drawproteins written 15 days ago by Tiphaine Martin • 40

votes

answers

views

answers

Understanding the output from Ballgown for DE

ballgown changes written 16 days ago by amy16 • 0

votes

answers

views

answers

ChAMP Normalization on EPIC Methylation Data

normalization champ methylation epic functionalnormalization written 17 days ago by yuabrahamliu • 0

votes

answers

views

answers

Ballgown for more than 2 group comaprison

software error bioconductor stattest function error written 17 days ago by amy16 • 0