0
votes
2
answers
9.3k
views
2
answers
DESeq - plotPCA
deseq written 5.6 years ago by Guest User12k • updated 5.6 years ago by Simon Anders3.5k
10
votes
0
answers
9.3k
views
0
answers
5
votes
2
answers
9.3k
views
2
answers
Group comparison in DESeq2
deseq2 results written 3.1 years ago by jjinhyoungkim20 • updated 3.1 years ago by Michael Love19k
10
votes
2
answers
9.3k
views
2
answers
FDR and padj in deseq and edger
edger deseq2 written 2.9 years ago by tonja.r40 • updated 2.9 years ago by Gordon Smyth35k
20
votes
2
answers
9.1k
views
8 follow
2
answers
Mapping genome regions to gene symbols
gene symbol tcga cnv coordinate written 3.4 years ago by NS30 • updated 3.4 years ago by pshannon80
2
votes
2
answers
9.1k
views
2
answers
Error in file(con, “r”) : cannot open the connection
phyloseq R import_biom otu qiime written 2.9 years ago by moanam0 • updated 2.9 years ago by mcmurdie20
6
votes
1
answer
9.1k
views
1
answer
DESeq2 baseMean counts
deseq2 written 2.8 years ago by zpingfeng0 • updated 2.8 years ago by Michael Love19k
3
votes
4
answers
9.0k
views
5 follow
4
answers
DESeq2 installation error
installation written 3.1 years ago by seeker0 • updated 11 months ago by Cheng-Yuan Kao80
2
votes
1
answer
8.8k
views
1
answer
Normalization in DESeq2
deseq deseq2 written 3.8 years ago by solgakar@bi.technion.ac.il60 • updated 3.8 years ago by Michael Love19k
3
votes
2
answers
8.8k
views
2
answers
how to calculate gene length to be used in rpkm() in edgeR
rnaseq edger rpkm written 4.4 years ago by shirley zhang1.0k • updated 3.9 years ago by Gordon Smyth35k
11
votes
2
answers
8.8k
views
2
answers
how to use biomaRt with ensembl build 37
biomart ensembl grch37 written 3.9 years ago by Pablo marin-garcia80 • updated 3.9 years ago by Thomas Maurel740
10
votes
3
answers
8.7k
views
7 follow
3
answers
Batch correction in DESeq2
rnaseq deseq2 combat removebatcheffect() batch effect written 2.8 years ago by AB10 • updated 2.3 years ago by adam0
0
votes
2
answers
8.7k
views
2
answers
Normalization by DEseq
genetics normalization deseq written 7.9 years ago by Rui Luo20 • updated 6 months ago by diannedai0
0
votes
2
answers
8.7k
views
2
answers
DESeq2 basemean and log2foldchange
deseq written 4.2 years ago by rob yang50 • updated 4.2 years ago by Michael Love19k
0
votes
1
answer
8.7k
views
1
answer
7
votes
3
answers
8.5k
views
3
answers
0
votes
1
answer
8.5k
views
1
answer
cannot open file './', reason 'Permission denied' in: file(file, "r")
written 11.1 years ago by mete@seas.upenn.edu50 • updated 11.1 years ago by Wolfgang Huber13k
0
votes
0
answers
8.4k
views
0
answers
0
votes
2
answers
8.4k
views
2
answers
limma, FDR, and p.adjust
limma written 13.8 years ago by Kimpel, Mark W890 • updated 13.8 years ago by Gordon Smyth35k
12
votes
16
answers
8.3k
views
14 follow
16
answers
RDAVIDWebService Error 301: Moved Permanently
rdavidwebservice david written 3.2 years ago by Vivek.b50 • updated 9 weeks ago by gevermalc0
2
votes
6
answers
8.2k
views
6
answers
0
votes
0
answers
8.0k
views
0
answers
3
votes
0
answers
7.9k
views
0
answers
4
votes
2
answers
7.7k
views
2
answers
Report and compare log2FC vs FC
deseq2 logfc written 3.5 years ago by Catalina Aguilar Hurtado50 • updated 3.5 years ago by smoorthie10
9
votes
1
answer
7.7k
views
10 follow
1
answer
DESEq2 comparison with mulitple cell types under 2 conditions
deseq2 multiple factor design written 3.4 years ago by kmu00440 • updated 3.4 years ago by Michael Love19k
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