7
votes
2
answers
7.5k
views
5 follow
2
answers
Differential expression of RNA-seq data using limma and voom()
limma written 4.2 years ago by Jon Bråte130 • updated 19 months ago by Gordon Smyth32k
0
votes
1
answer
7.4k
views
1
answer
0
votes
2
answers
7.4k
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2
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DESeq2 basemean and log2foldchange
deseq written 3.6 years ago by rob yang50 • updated 3.6 years ago by Michael Love16k
0
votes
2
answers
7.3k
views
2
answers
limma, FDR, and p.adjust
limma written 13.2 years ago by Kimpel, Mark W890 • updated 13.2 years ago by Gordon Smyth32k
3
votes
2
answers
7.3k
views
2
answers
how to calculate gene length to be used in rpkm() in edgeR
rnaseq edger rpkm written 3.8 years ago by shirley zhang1.0k • updated 3.3 years ago by Gordon Smyth32k
2
votes
0
answers
7.2k
views
0
answers
10
votes
16
answers
7.2k
views
13 follow
16
answers
RDAVIDWebService Error 301: Moved Permanently
rdavidwebservice david written 2.6 years ago by Vivek.b40 • updated 2.1 years ago by Cristobal Fresno Rodríguez350
3
votes
4
answers
7.2k
views
5 follow
4
answers
DESeq2 installation error
installation written 2.5 years ago by seeker0 • updated 4 months ago by Cheng-Yuan Kao80
2
votes
2
answers
7.1k
views
2
answers
Error in file(con, “r”) : cannot open the connection
phyloseq R import_biom otu qiime written 2.4 years ago by moanam0 • updated 2.4 years ago by mcmurdie20
0
votes
0
answers
7.1k
views
0
answers
5
votes
2
answers
6.8k
views
5 follow
2
answers
deseq2 filter the low counts
deseq2 lowcount written 3.0 years ago by aristotele_m20 • updated 17 months ago by pkachroo10
0
votes
0
answers
6.8k
views
0
answers
8
votes
0
answers
6.7k
views
0
answers
0
votes
2
answers
6.7k
views
2
answers
edgeR warnings and then error
edger written 5.3 years ago by john herbert550 • updated 5.3 years ago by Gordon Smyth32k
0
votes
1
answer
6.6k
views
1
answer
cannot open file './', reason 'Permission denied' in: file(file, "r")
written 10.5 years ago by mete@seas.upenn.edu50 • updated 10.5 years ago by Wolfgang Huber13k
0
votes
1
answer
6.6k
views
1
answer
Normalization by DEseq
genetics normalization deseq written 7.4 years ago by Rui Luo20 • updated 7.4 years ago by Wolfgang Huber13k
0
votes
2
answers
6.6k
views
2
answers
Applying DESeq on RSEM output
edger deseq written 4.9 years ago by dvir.tau@gmail.com30 • updated 4.9 years ago by Simon Anders3.4k
17
votes
6
answers
6.6k
views
10 follow
6
answers
Problem with biomart's listMarts function
biomart bug written 2.3 years ago by Johannes Rainer1.2k • updated 22 months ago by Paul Shannon360
14
votes
2
answers
6.5k
views
8 follow
2
answers
Mapping genome regions to gene symbols
gene symbol tcga cnv coordinate written 2.8 years ago by NS10 • updated 2.8 years ago by pshannon80
5
votes
12
answers
6.3k
views
9 follow
12
answers
WGCNA for RNA-Seq Sample Set, Outliers, and Spearman correlation
wgcna sample size outliers written 3.0 years ago by brohawndg50 • updated 2.5 years ago by mh.manoj0
2
votes
2
answers
6.2k
views
2
answers
2
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4
answers
6.2k
views
4
answers
9
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2
answers
6.1k
views
2
answers
FDR and padj in deseq and edger
edger deseq2 written 2.3 years ago by tonja.r40 • updated 2.3 years ago by Gordon Smyth32k
0
votes
1
answer
6.1k
views
1
answer
ggplot2 error
regression written 4.1 years ago by Alyaa Mahmoud440
2
votes
1
answer
6.1k
views
1
answer
biocLite() fails to update packages when main library not writable
bioclite package updates written 3.0 years ago by Jenny Drnevich1.9k • updated 3.0 years ago by Dan Tenenbaum ♦♦ 8.2k
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