2
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0
answers
8.4k
views
0
answers
11
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2
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8.3k
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2
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how to use biomaRt with ensembl build 37
biomart ensembl grch37 written 3.7 years ago by Pablo marin-garcia80 • updated 3.7 years ago by Thomas Maurel740
2
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2
answers
8.3k
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2
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Error in file(con, “r”) : cannot open the connection
phyloseq R import_biom otu qiime written 2.7 years ago by moanam0 • updated 2.7 years ago by mcmurdie20
3
votes
4
answers
8.3k
views
5 follow
4
answers
DESeq2 installation error
installation written 2.8 years ago by seeker0 • updated 8 months ago by Cheng-Yuan Kao80
9
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0
answers
8.1k
views
0
answers
3
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2
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8.1k
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2
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how to calculate gene length to be used in rpkm() in edgeR
rnaseq edger rpkm written 4.1 years ago by shirley zhang1.0k • updated 3.6 years ago by Gordon Smyth33k
0
votes
2
answers
8.1k
views
2
answers
DESeq2 basemean and log2foldchange
deseq written 3.9 years ago by rob yang50 • updated 3.9 years ago by Michael Love18k
0
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1
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8.1k
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1
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2
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6
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8.0k
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6
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0
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2
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7.9k
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2
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limma, FDR, and p.adjust
limma written 13.5 years ago by Kimpel, Mark W890 • updated 13.5 years ago by Gordon Smyth33k
0
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0
answers
7.9k
views
0
answers
14
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2
answers
7.8k
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8 follow
2
answers
Mapping genome regions to gene symbols
gene symbol tcga cnv coordinate written 3.1 years ago by NS10 • updated 3.1 years ago by pshannon80
0
votes
2
answers
7.8k
views
2
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Normalization by DEseq
genetics normalization deseq written 7.7 years ago by Rui Luo20 • updated 3 months ago by diannedai0
3
votes
2
answers
7.8k
views
2
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Group comparison in DESeq2
deseq2 results written 2.8 years ago by jjinhyoungkim10 • updated 2.8 years ago by Michael Love18k
10
votes
16
answers
7.8k
views
13 follow
16
answers
RDAVIDWebService Error 301: Moved Permanently
rdavidwebservice david written 2.9 years ago by Vivek.b40 • updated 2.5 years ago by Cristobal Fresno Rodríguez350
10
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2
answers
7.7k
views
2
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FDR and padj in deseq and edger
edger deseq2 written 2.6 years ago by tonja.r40 • updated 2.6 years ago by Gordon Smyth33k
0
votes
1
answer
7.7k
views
1
answer
cannot open file './', reason 'Permission denied' in: file(file, "r")
written 10.9 years ago by mete@seas.upenn.edu50 • updated 10.9 years ago by Wolfgang Huber13k
6
votes
1
answer
7.4k
views
1
answer
DESeq2 baseMean counts
deseq2 written 2.6 years ago by zpingfeng0 • updated 2.6 years ago by Michael Love18k
0
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0
answers
7.4k
views
0
answers
6
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3
answers
7.2k
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3
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10
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3
answers
7.2k
views
7 follow
3
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Batch correction in DESeq2
rnaseq deseq2 combat removebatcheffect() batch effect written 2.5 years ago by AB10 • updated 2.0 years ago by adam0
21
votes
6
answers
7.1k
views
10 follow
6
answers
Problem with biomart's listMarts function
biomart bug written 2.6 years ago by Johannes Rainer1.3k • updated 2.1 years ago by Paul Shannon360
0
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2
answers
7.1k
views
2
answers
Applying DESeq on RSEM output
edger deseq written 5.2 years ago by dvir.tau@gmail.com30 • updated 5.2 years ago by Simon Anders3.5k
2
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2
answers
7.0k
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2
answers
0
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2
answers
7.0k
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2
answers
edgeR warnings and then error
edger written 5.6 years ago by john herbert550 • updated 5.6 years ago by Gordon Smyth33k
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