2
votes
2
answers
12k
views
2
answers
Limma design and contrast matrix question.
microarray regression limma written 5.2 years ago by Matthew Thornton300 • updated 5.2 years ago by James W. MacDonald49k
8
votes
2
answers
12k
views
5 follow
2
answers
Differential expression of RNA-seq data using limma and voom()
limma written 5.4 years ago by Jon Bråte150 • updated 2.7 years ago by Gordon Smyth37k
0
votes
2
answers
12k
views
5 follow
2
answers
Fine tuning heatmap.2 graphics
microarray written 13.1 years ago by Marc Saric70 • updated 13.1 years ago by Wittner, Ben290
0
votes
1
answer
12k
views
1
answer
EdgeR LogCpm and LogFC values calculation
edger written 5.2 years ago by Gordon Smyth37k • updated 5.2 years ago by Koen Van den Berge170
20
votes
2
answers
11k
views
8 follow
2
answers
Mapping genome regions to gene symbols
gene symbol tcga cnv coordinate written 4.0 years ago by NS30 • updated 4.0 years ago by pshannon80
7
votes
3
answers
11k
views
3
answers
1
vote
2
answers
11k
views
2
answers
Converting first column to rownames
rstudio written 3.1 years ago by John30
2
votes
2
answers
11k
views
2
answers
Error in file(con, “r”) : cannot open the connection
phyloseq R import_biom otu qiime written 3.5 years ago by moanam0 • updated 3.5 years ago by mcmurdie20
2
votes
2
answers
11k
views
2
answers
Heatmap with error message: `x' must be a numeric matrix
R heatmap numericmatrix written 3.1 years ago by Biologist70 • updated 3.1 years ago by Assa Yeroslaviz1.4k
20
votes
2
answers
11k
views
5 follow
2
answers
2
votes
0
answers
11k
views
0
answers
3
votes
0
answers
11k
views
0
answers
0
votes
2
answers
10k
views
2
answers
Normalization by DEseq
genetics normalization deseq written 8.5 years ago by Rui Luo20 • updated 13 months ago by diannedai0
12
votes
3
answers
10k
views
7 follow
3
answers
0
votes
2
answers
10k
views
2
answers
DESeq - plotPCA
deseq written 6.1 years ago by Guest User12k • updated 6.1 years ago by Simon Anders3.5k
9
votes
1
answer
10k
views
10 follow
1
answer
DESEq2 comparison with mulitple cell types under 2 conditions
deseq2 multiple factor design written 3.9 years ago by kmu00440 • updated 3.9 years ago by Michael Love23k
3
votes
4
answers
10k
views
5 follow
4
answers
DESeq2 installation error
installation written 3.7 years ago by seeker0 • updated 18 months ago by Cheng-Yuan Kao80
4
votes
2
answers
10k
views
2
answers
Report and compare log2FC vs FC
deseq2 logfc written 4.1 years ago by Catalina Aguilar Hurtado50 • updated 4.1 years ago by smoorthie10
3
votes
2
answers
10k
views
2
answers
how to calculate gene length to be used in rpkm() in edgeR
rnaseq edger rpkm written 5.0 years ago by shirley zhang1.0k • updated 4.5 years ago by Gordon Smyth37k
0
votes
1
answer
10.0k
views
1
answer
cannot open file './', reason 'Permission denied' in: file(file, "r")
written 11.7 years ago by mete@seas.upenn.edu50 • updated 11.7 years ago by Wolfgang Huber13k
0
votes
2
answers
9.8k
views
2
answers
DESeq2 basemean and log2foldchange
deseq written 4.7 years ago by rob yang50 • updated 4.7 years ago by Michael Love23k
13
votes
2
answers
9.8k
views
2
answers
how to use biomaRt with ensembl build 37
biomart ensembl grch37 written 4.5 years ago by Pablo marin-garcia90 • updated 4.5 years ago by Thomas Maurel770
3
votes
2
answers
9.6k
views
2
answers
0
votes
1
answer
9.5k
views
1
answer
0
votes
2
answers
9.5k
views
2
answers
limma, FDR, and p.adjust
limma written 14.3 years ago by Kimpel, Mark W890 • updated 14.3 years ago by Gordon Smyth37k
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