3
votes
2
answers
12k
views
7 follow
2
answers
Problems updating Bioconductor with R 3.2.0
r update upgrade written 4.2 years ago by daniil.sarkisyan10 • updated 4.2 years ago by Dan Tenenbaum8.2k
2
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2
answers
12k
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2
answers
Limma design and contrast matrix question.
microarray regression limma written 5.4 years ago by Matthew Thornton320 • updated 5.4 years ago by James W. MacDonald50k
0
votes
2
answers
12k
views
5 follow
2
answers
Fine tuning heatmap.2 graphics
microarray written 13.3 years ago by Marc Saric70 • updated 13.3 years ago by Wittner, Ben290
7
votes
3
answers
12k
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3
answers
1
vote
2
answers
12k
views
2
answers
Converting first column to rownames
rstudio written 3.3 years ago by John30
22
votes
2
answers
12k
views
10 follow
2
answers
Mapping genome regions to gene symbols
gene symbol tcga cnv coordinate written 4.1 years ago by NS50 • updated 4.1 years ago by pshannon80
0
votes
1
answer
12k
views
1
answer
EdgeR LogCpm and LogFC values calculation
edger written 5.4 years ago by Gordon Smyth37k • updated 5.4 years ago by Koen Van den Berge170
3
votes
0
answers
12k
views
0
answers
2
votes
2
answers
12k
views
2
answers
Heatmap with error message: `x' must be a numeric matrix
R heatmap numericmatrix written 3.3 years ago by Biologist70 • updated 3.3 years ago by Assa Yeroslaviz1.4k
2
votes
2
answers
11k
views
2
answers
Error in file(con, “r”) : cannot open the connection
phyloseq R import_biom otu qiime written 3.7 years ago by moanam0 • updated 3.7 years ago by mcmurdie20
20
votes
2
answers
11k
views
5 follow
2
answers
2
votes
0
answers
11k
views
0
answers
0
votes
2
answers
11k
views
2
answers
Normalization by DEseq
genetics normalization deseq written 8.7 years ago by Rui Luo20 • updated 15 months ago by diannedai0
9
votes
1
answer
11k
views
10 follow
1
answer
DESEq2 comparison with mulitple cell types under 2 conditions
deseq2 multiple factor design written 4.1 years ago by kmu00440 • updated 4.1 years ago by Michael Love23k
4
votes
2
answers
11k
views
2
answers
Report and compare log2FC vs FC
deseq2 logfc written 4.2 years ago by Catalina Aguilar Hurtado50 • updated 4.2 years ago by smoorthie10
12
votes
3
answers
10k
views
7 follow
3
answers
0
votes
2
answers
10k
views
2
answers
DESeq - plotPCA
deseq written 6.3 years ago by Guest User12k • updated 6.3 years ago by Simon Anders3.5k
3
votes
2
answers
10k
views
2
answers
3
votes
4
answers
10k
views
5 follow
4
answers
DESeq2 installation error
installation written 3.8 years ago by seeker0 • updated 20 months ago by Cheng-Yuan Kao80
0
votes
1
answer
10k
views
1
answer
cannot open file './', reason 'Permission denied' in: file(file, "r")
written 11.9 years ago by mete@seas.upenn.edu50 • updated 11.9 years ago by Wolfgang Huber13k
3
votes
2
answers
10k
views
2
answers
how to calculate gene length to be used in rpkm() in edgeR
rnaseq edger rpkm written 5.1 years ago by shirley zhang1.0k • updated 4.6 years ago by Gordon Smyth37k
13
votes
2
answers
10k
views
2
answers
how to use biomaRt with ensembl build 37
biomart ensembl grch37 written 4.7 years ago by Pablo marin-garcia90 • updated 4.7 years ago by Thomas Maurel770
0
votes
2
answers
10k
views
2
answers
DESeq2 basemean and log2foldchange
deseq written 4.9 years ago by rob yang50 • updated 4.9 years ago by Michael Love23k
2
votes
3
answers
10.0k
views
6 follow
3
answers
DEseq2 time-series design.
timecourse deseq2 design written 4.6 years ago by shao80 • updated 4.1 years ago by lmolla10
5
votes
2
answers
9.8k
views
2
answers
plotPCA - how to add labels to a PCA plot
deseq2 plotpca labels written 2.4 years ago by al-ash20 • updated 2.4 years ago by Federico Marini120
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