5
votes
1
answer
1.6k
views
9 follow
1
answer
16
votes
0
answers
4.0k
views
10 follow
0
answers
Tutorial: Bioconductor on Coursera
tutorial mooc written 2.9 years ago by Kasper Daniel Hansen6.4k • updated 4 months ago by ifmrdatascience0
14
votes
3
answers
5.3k
views
12 follow
3
answers
New function lfcShrink() in DESeq2
deseq2 written 14 months ago by Michael Love18k
14
votes
6
answers
2.2k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 2.4 years ago by florian.noack60 • updated 8 months ago by Rory Stark2.5k
17
votes
1
answer
275
views
6 follow
1
answer
How to check the read length for all the TCGA data samples in GDC?
tcga wes gdc gdc data written 3 months ago by Biologist70 • updated 3 months ago by Sean Davis21k
2
votes
0
answers
327
views
5 follow
0
answers
4
votes
2
answers
270
views
7 follow
2
answers
Incredibly high/low foldChange
deseq2 written 4 months ago by jovel_juan10
6
votes
2
answers
4.3k
views
8 follow
2
answers
remove microarray batch effects using Limma
microarray written 7.7 years ago by Xie, Zhi NIH/NHLBI [E]60 • updated 9 months ago by Gordon Smyth34k
6
votes
1
answer
1.8k
views
7 follow
1
answer
biomaRt: error using useDataset or useMart
biomart software error usemart usedataset written 7 months ago by lpsantamaria40 • updated 7 months ago by Mike Smith2.8k
17
votes
4
answers
4.3k
views
10 follow
4
answers
Removing continuous covariate effects in limma analysis
microarray limma written 3.3 years ago by Pauly Lin80 • updated 10 months ago by Gordon Smyth34k
10
votes
1
answer
1.1k
views
1
answer
17
votes
2
answers
1.7k
views
7 follow
2
answers
Limma camera function never gives any differentially expressed gene sets
limma written 3.0 years ago by chris86380 • updated 11 months ago by misterrandyclark0
4
votes
0
answers
240
views
0
answers
1
vote
0
answers
286
views
0
answers
1
vote
1
answer
57
views
1
answer
cram for new chips
beadarray crlmm illumina beadarray written 4 weeks ago by lack.justin10 • updated 28 days ago by Valerie Obenchain ♦♦ 6.5k
1
vote
1
answer
104
views
1
answer
MEDIP: Problem with MEDIPS.createSet
bsgenome medips medip-seq written 4 months ago by vjain0 • updated 4 months ago by Lukas Chavez470
4
votes
1
answer
432
views
1
answer
Rsubread counting peaks ATACseq
rsubread narrowpeaks featurecounts atac-seq written 8 months ago by j.bergenstrahle80 • updated 8 months ago by Wei Shi2.9k
5
votes
1
answer
208
views
5 follow
1
answer
2 cells x 2 media x 2 conditions
deseq2 written 9 months ago by dickson.russel10 • updated 9 months ago by Gavin Kelly550
3
votes
1
answer
354
views
1
answer
3
votes
1
answer
667
views
1
answer
3
votes
1
answer
310
views
1
answer
5
votes
1
answer
265
views
1
answer
Testing three-way interactions in DESeq2
rnaseq deseq2 interactions rna-seq written 9 months ago by red_bricks20 • updated 9 months ago by Michael Love18k
2
votes
2
answers
237
views
2
answers
AgilentG4502A_07_2 and AgilentG4502A_07_1
normalization preprocessing limma read.maimages written 7 months ago by marviedemit10 • updated 7 months ago by Gordon Smyth34k
3
votes
3
answers
1.7k
views
5 follow
3
answers
What does this error mean? - issue implementing SVA
sva rna-seq written 2.4 years ago by kmuench30 • updated 3 months ago by Sandip Darji0
3
votes
1
answer
213
views
1
answer
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