14
votes
6
answers
1.5k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 20 months ago by florian.noack60 • updated 19 days ago by Rory Stark2.1k
4
votes
4
answers
2.6k
views
6 follow
4
answers
1
vote
1
answer
94
views
5 follow
1
answer
update TCGAbiolinks to version 3.6 and GDCquery doesn't work
software error tcgabiolinks written 13 days ago by sechenmo0 • updated 13 days ago by eshelden20
3
votes
1
answer
109
views
1
answer
clusterProfiler - Non model organism
clusterprofiler written 18 days ago by rozanskide10 • updated 18 days ago by Guangchuang Yu800
1
vote
1
answer
80
views
1
answer
No differential expression with limmaCtData possible
limma htqpcr written 3 days ago by h.roest0 • updated 7 hours ago by Axel Klenk820
1
vote
1
answer
91
views
1
answer
PCA from TPM
pca tpm tximport written 25 days ago by tanyabioinfo10
4
votes
1
answer
351
views
1
answer
3
votes
0
answers
92
views
0
answers
2
votes
1
answer
87
views
1
answer
0
votes
0
answers
89
views
0
answers
4
votes
3
answers
464
views
3
answers
Choosing a threshold for minimum counts in RNAseq
rnaseq deseq2 written 17 months ago by laianavarromartin10 • updated 5 days ago by Michael Love14k
3
votes
1
answer
82
views
1
answer
Explainnation of featureCounts in-built annotation?
rnaseq annotation featurecounts written 24 days ago by Claire0 • updated 21 days ago by Wei Shi2.7k
0
votes
2
answers
277
views
2
answers
0
votes
3
answers
106
views
3
answers
1
vote
1
answer
89
views
1
answer
Difference between SummarizeOverlaps and HTSeq
R summarizeoverlaps htseqcounts written 20 days ago by Walter F. Baumann 10 • updated 18 days ago by thokall60
0
votes
1
answer
91
views
1
answer
Tximport with RSEM error
rsem written 27 days ago by hs.lansdell10 • updated 27 days ago by k.vitting.seerup10
0
votes
2
answers
173
views
2
answers
question on GO analysis using clusterProfiler
clusterprofiler geneontology written 12 days ago by giuseppe05250 • updated 10 days ago by thokall60
0
votes
0
answers
68
views
0
answers
3
votes
2
answers
123
views
2
answers
DESeq2 dispersion and p-value histograms
rnaseq deseq2 dispersion fdrtool written 24 days ago by rrcutler30 • updated 20 days ago by Bernd Klaus470
1
vote
2
answers
102
views
2
answers
2
votes
1
answer
112
views
1
answer
Volcano Plot (highlighting top genes in a different color)
volcanoplot written 13 days ago by Natasha0 • updated 13 days ago by thokall60
3
votes
1
answer
131
views
1
answer
3
votes
1
answer
120
views
1
answer
2
votes
1
answer
142
views
1
answer
Upgrade to 3.6 - can't seem to get past Bioconductor 3.5
bioclite bioconductor written 19 days ago by barb.bryant10 • updated 19 days ago by shepherl ♦♦ 510
4
votes
1
answer
91
views
1
answer
Rsubread counting peaks ATACseq
rsubread narrowpeaks featurecounts atac-seq written 5 days ago by j.bergenstrahle70 • updated 4 days ago by Wei Shi2.7k
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