13
votes
3
answers
3.0k
views
12 follow
3
answers
New function lfcShrink() in DESeq2
deseq2 written 8 months ago by Michael Love15k
2
votes
0
answers
142
views
5 follow
0
answers
6
votes
3
answers
138
views
3
answers
Limma Voom produces many identical adjusted p-values
adjusted pvalue limma voom written 10 days ago by b.nota290 • updated 10 days ago by Gordon Smyth32k
1
vote
2
answers
289
views
2
answers
4
votes
2
answers
101
views
2
answers
How to check if the microarray data is from codelink
microarray codelink written 14 days ago by Agaz Hussain Wani250 • updated 14 days ago by Sean Davis21k
1
vote
1
answer
121
views
1
answer
Is there a conceptual difference between vst/rlog transforms and lfcShrink?
deseq2 written 16 days ago by kieran.mace10 • updated 16 days ago by Michael Love15k
2
votes
1
answer
94
views
1
answer
Protein differential Expression analysis
proteomics differential expression written 15 days ago by cardin.julie0 • updated 12 days ago by Laurent Gatto880
1
vote
1
answer
172
views
1
answer
1
vote
0
answers
55
views
0
answers
1
vote
2
answers
44
views
2
answers
edgeR: error ih summary(decideTests(lrt))
edger written 17 hours ago by Pingu0 • updated 6 hours ago by Gordon Smyth32k
2
votes
3
answers
91
views
3
answers
voom command broken in limma_3.34.5?
limma voom written 10 days ago by sjk3140 • updated 10 days ago by Gordon Smyth32k
1
vote
1
answer
390
views
1
answer
Job: junior level position in proteomics/data science
proteomics job docker git machine learning written 3 months ago by petyuk70 • updated 14 days ago by karimse070
0
votes
1
answer
52
views
1
answer
flowCL - svn conversion to Github
git-svn bridge github flowcl written 12 days ago by Justin Meskas60 • updated 12 days ago by nitesh.turaga120
3
votes
1
answer
126
views
1
answer
log fold change threshold in Deseq2 - using lfcthreshold
deseq2 lfcthreshold written 25 days ago by lirongrossmann0 • updated 19 days ago by Michael Love15k
1
vote
1
answer
79
views
1
answer
Use interactions to get the difference in the effect of two treatments
deseq2 written 8 days ago by rrcutler30 • updated 5 days ago by Michael Love15k
2
votes
1
answer
68
views
1
answer
Remove one sample from DESeq2 subject
deseq2 written 5 days ago by Raymond0 • updated 5 days ago by Michael Love15k
1
vote
1
answer
80
views
1
answer
Transform index to chromosome in DECIPHER package
decipher written 12 days ago by Vinicius Henrique da Silva20 • updated 12 days ago by Erik Wright100
0
votes
1
answer
63
views
1
answer
10
votes
1
answer
172
views
1
answer
SummarizedExperiment object from GEOquery obtained GSE
geoquery summarizedexperiment matrix geo written 21 days ago by rbronste50 • updated 19 days ago by Sean Davis21k
3
votes
1
answer
98
views
1
answer
edgeR trended or tagwise
edger glmqlftest() written 9 days ago by Andy9130 • updated 9 days ago by Aaron Lun18k
0
votes
2
answers
83
views
2
answers
0
votes
1
answer
115
views
1
answer
0
votes
0
answers
71
views
0
answers
0
votes
1
answer
65
views
1
answer
how to read htseq-count
edger htseqcounts written 4 days ago by Bioinformatics20 • updated 3 days ago by Gordon Smyth32k
2
votes
1
answer
107
views
1
answer
Colour a phylogenetic tree, based on column in DECIPHER?
biostrings decipher R written 19 days ago by reubenmcgregor880 • updated 19 days ago by Erik Wright100
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