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15
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0
answers
3.7k
views
10 follow
0
answers
Tutorial: Bioconductor on Coursera
tutorial mooc written 2.6 years ago by Kasper Daniel Hansen ♦ 6.3k • updated 29 days ago by ifmrdatascience • 0
3
votes
3
answers
1.4k
views
5 follow
3
answers
What does this error mean? - issue implementing SVA
sva rna-seq written 2.2 years ago by kmuench • 30 • updated 19 days ago by Sandip Darji • 0
4
votes
2
answers
70
views
2
answers
Separate listing of up-regulated and down-regulated genes in edgeR DGE results.
edger differential gene expression upregulated genes downregulated genes written 10 days ago by fawazfebin • 30 • updated 9 days ago by lisacarlon25 • 0
0
votes
1
answer
64
views
1
answer
featureCounts taking 4-10 hours per BAM file?
rnaseq R featurecounts written 6 days ago by octopuslegs11 • 0
16
votes
1
answer
157
views
1
answer
How to check the read length for all the TCGA data samples in GDC?
tcga wes gdc gdc data written 5 days ago by ghk • 60 • updated 5 days ago by Sean Davis ♦ 21k
0
votes
3
answers
3.4k
views
3
answers
XML package cannot be installed
process written 5.7 years ago by Guest User • 12k • updated 16 days ago by nilesh.iiita • 0
0
votes
2
answers
1.3k
views
2
answers
error ReadAffy
arabidopsis thaliana cdf affy gcrma process oligo xps written 4.2 years ago by nooshin • 290 • updated 26 days ago by joseph.a.white1 • 0
2
votes
1
answer
74
views
1
answer
ReportingTools Segmentation fault
reportingtools reporting tools written 5 days ago by michael • 10 • updated 5 days ago by becker.gabriel • 0
3
votes
1
answer
62
views
1
answer
Trouble installing bioconductor packages: ERROR: sub-architecture 'R' is not installed
mac os x package installation written 9 days ago by brt381 • 0 • updated 9 days ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
377
views
1
answer
Differential expression testing for groups with unequal variances/dispersions?
edger written 4.9 years ago by Ryan C. Thompson ♦ 6.5k • updated 13 days ago by sgupt46 • 0
2
votes
1
answer
109
views
1
answer
Design/contrast matrix for Multivariate experimental design in limma
microarray limma design and contrast matrix written 6 days ago by 1234anjalianjali1234 • 0 • updated 5 days ago by Gordon Smyth ♦ 33k
6
votes
2
answers
146
views
2
answers
Difficulty in finding DEG using TCGA data from FireBrowse
limma tcga deg firebrowse written 18 days ago by lawarde.ankita1 • 20 • updated 17 days ago by svlachavas • 570
4
votes
1
answer
106
views
1
answer
cameraPR vs geneSetTest and ROAST/CAMERA in general
limma gene set analysis voomwithqualityweights written 20 days ago by BharathAnanth • 10 • updated 20 days ago by Aaron Lun • 19k
0
votes
2
answers
1.6k
views
2
answers
Going crazy with normalizing TCGA raw rsem gene count
rnaseq normalization cancer differential gene expression tcga written 3.0 years ago by ezz • 0 • updated 26 days ago by Dimitris Vavoulis • 0
3
votes
2
answers
2.5k
views
2
answers
DESeq2 Error in varianceStabilizingTransformation
deseq2 written 3.5 years ago by mfarhi • 10 • updated 2 days ago by kasia_piwosz • 0
3
votes
1
answer
102
views
1
answer
How to find the degree of freedom, effect size and the variance of effect size for each contrast
microarray limma written 6 weeks ago by zicheng.hu • 20 • updated 11 days ago by williamgeorge51547 • 0
5
votes
0
answers
682
views
0
answers
News: Invitation to submit articles to the Bioconductor gateway on F1000Research
news publication written 24 days ago by Sean Davis ♦ 21k
1
vote
1
answer
44
views
1
answer
miRNA DE analysis using DeSeq2
deseq2 written 4 days ago by sehjpal.madhu • 10 • updated 4 days ago by Michael Love ♦ 17k
3
votes
2
answers
89
views
2
answers
EdgeR model formula design matrix
edger design matrix paired samples written 18 days ago by aiko • 0 • updated 18 days ago by Aaron Lun • 19k
5
votes
1
answer
51
views
1
answer
edgeR normalisation factors different between experimental groups
edger written 10 days ago by maltethodberg • 50 • updated 10 days ago by Aaron Lun • 19k
2
votes
1
answer
50
views
1
answer
Limma model for paired and pool together
rnaseq limma design written 4 days ago by b.nota • 290 • updated 4 days ago by Ryan C. Thompson ♦ 6.5k
0
votes
0
answers
31
views
0
answers
Setting up PLAYRDesign gives error on makeTxDbFromUCSC, error in tableNames
genomicfeatures R written 4 days ago by songshan.guo • 0
3
votes
2
answers
161
views
2
answers
could not find function "champ.load"
champ methylationepic champ 2.9.10 written 4 weeks ago by david.ch • 0
0
votes
1
answer
116
views
1
answer
limma - Multi-level Experiments - time course data
limma deg rnaseq_analysis limma voom written 24 days ago by SPbeginner • 0 • updated 24 days ago by Aaron Lun • 19k
0
votes
2
answers
56
views
2
answers
GenomicRanges::slidingWindows - method is not in the library
genomicranges-method slidingwindows written 9 days ago by m.boltengagen • 0
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