10
votes
11
answers
3.8k
views
17 follow
11
answers
readCufflinks problem with extdata
cummerbund written 6 months ago by biakemi30 • updated 3 months ago by markus.ball10
28
votes
7
answers
1.9k
views
14 follow
7
answers
[FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer gviz written 11 months ago by Ramiro Magno80 • updated 6 months ago by aina.jene10
13
votes
3
answers
3.0k
views
12 follow
3
answers
New function lfcShrink() in DESeq2
deseq2 written 8 months ago by Michael Love15k
14
votes
6
answers
1.6k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 22 months ago by florian.noack60 • updated 11 weeks ago by Rory Stark2.2k
17
votes
4
answers
3.5k
views
10 follow
4
answers
Removing continuous covariate effects in limma analysis
microarray limma written 2.8 years ago by Pauly Lin80 • updated 4 months ago by Gordon Smyth32k
5
votes
1
answer
868
views
9 follow
1
answer
6
votes
2
answers
3.4k
views
8 follow
2
answers
remove microarray batch effects using Limma
microarray written 7.2 years ago by Xie, Zhi NIH/NHLBI [E]60 • updated 3 months ago by Gordon Smyth32k
17
votes
2
answers
1.4k
views
7 follow
2
answers
Limma camera function never gives any differentially expressed gene sets
limma written 2.5 years ago by chris86340 • updated 5 months ago by misterrandyclark0
0
votes
3
answers
1.1k
views
7 follow
3
answers
error in SRAdb
sradb written 3.5 years ago by Faryabi, Robert NIH/NCI [F]30 • updated 3 months ago by djlemas0
0
votes
5
answers
1.0k
views
7 follow
5
answers
package 'ChAMP' demo/test code fails at champ.CNA()
software error written 3.0 years ago by Hamid Bolouri90 • updated 12 months ago by Yuan Tian70
7
votes
1
answer
550
views
6 follow
1
answer
15
votes
1
answer
639
views
6 follow
1
answer
News: markdown is coming to the support site
news markdown written 6 months ago by Lucas Schiffer160
8
votes
2
answers
261
views
6 follow
2
answers
2
votes
5
answers
601
views
6 follow
5
answers
package or namespace load failed for TCGAbiolinks
tcgabiolinks written 4 months ago by jason.yijialin0 • updated 3 months ago by wenhuo hu200
4
votes
4
answers
2.8k
views
6 follow
4
answers
8
votes
0
answers
1.9k
views
6 follow
0
answers
7
votes
3
answers
784
views
5 follow
3
answers
1
vote
1
answer
157
views
5 follow
1
answer
update TCGAbiolinks to version 3.6 and GDCquery doesn't work
software error tcgabiolinks written 10 weeks ago by sechenmo0 • updated 10 weeks ago by eshelden20
2
votes
2
answers
1.4k
views
5 follow
2
answers
5
votes
0
answers
383
views
5 follow
0
answers
8
votes
2
answers
1.1k
views
5 follow
2
answers
Differential expression analysis starting from TPM data
R tpm written 5 months ago by cahidora20 • updated 5 months ago by Gordon Smyth32k
9
votes
2
answers
1.5k
views
5 follow
2
answers
What to use: PCA or tSNE dimension reduction in DESeq2 analysis?
rnaseq deseq2 pca tsne written 6 months ago by s.w.vanderlaan20 • updated 6 months ago by Kushal K Dey10
2
votes
0
answers
141
views
5 follow
0
answers
5
votes
1
answer
146
views
5 follow
1
answer
2 cells x 2 media x 2 conditions
deseq2 written 3 months ago by dickson.russel10 • updated 3 months ago by Gavin Kelly550
3
votes
4
answers
7.0k
views
5 follow
4
answers
DESeq2 installation error
installation written 2.4 years ago by seeker0 • updated 3 months ago by Cheng-Yuan Kao80
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