11
votes
11
answers
5.0k
views
18 follow
11
answers
readCufflinks problem with extdata
cummerbund written 12 months ago by biakemi40 • updated 9 months ago by markus.ball10
28
votes
7
answers
2.3k
views
14 follow
7
answers
[FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer gviz written 17 months ago by Ramiro Magno100 • updated 12 months ago by aina.jene10
14
votes
3
answers
5.2k
views
12 follow
3
answers
New function lfcShrink() in DESeq2
deseq2 written 14 months ago by Michael Love18k
17
votes
4
answers
4.3k
views
10 follow
4
answers
Removing continuous covariate effects in limma analysis
microarray limma written 3.3 years ago by Pauly Lin80 • updated 10 months ago by Gordon Smyth34k
14
votes
6
answers
2.2k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 2.3 years ago by florian.noack60 • updated 8 months ago by Rory Stark2.5k
16
votes
0
answers
4.0k
views
10 follow
0
answers
Tutorial: Bioconductor on Coursera
tutorial mooc written 2.9 years ago by Kasper Daniel Hansen6.4k • updated 3 months ago by ifmrdatascience0
5
votes
1
answer
1.6k
views
9 follow
1
answer
6
votes
2
answers
4.3k
views
8 follow
2
answers
remove microarray batch effects using Limma
microarray written 7.7 years ago by Xie, Zhi NIH/NHLBI [E]60 • updated 9 months ago by Gordon Smyth34k
8
votes
2
answers
534
views
7 follow
2
answers
6
votes
1
answer
1.8k
views
7 follow
1
answer
biomaRt: error using useDataset or useMart
biomart software error usemart usedataset written 7 months ago by lpsantamaria40 • updated 7 months ago by Mike Smith2.8k
0
votes
3
answers
1.3k
views
7 follow
3
answers
error in SRAdb
sradb written 4.0 years ago by Faryabi, Robert NIH/NCI [F]30 • updated 9 months ago by djlemas0
4
votes
2
answers
266
views
7 follow
2
answers
Incredibly high/low foldChange
deseq2 written 4 months ago by jovel_juan10
17
votes
2
answers
1.7k
views
7 follow
2
answers
Limma camera function never gives any differentially expressed gene sets
limma written 3.0 years ago by chris86380 • updated 11 months ago by misterrandyclark0
20
votes
1
answer
925
views
7 follow
1
answer
News: markdown is coming to the support site
news markdown written 12 months ago by Lucas Schiffer220
4
votes
4
answers
3.6k
views
6 follow
4
answers
2
votes
5
answers
877
views
6 follow
5
answers
package or namespace load failed for TCGAbiolinks
tcgabiolinks written 10 months ago by jason.yijialin0 • updated 9 months ago by wenhuo hu200
18
votes
2
answers
3.1k
views
6 follow
2
answers
1
vote
2
answers
264
views
6 follow
2
answers
DEXSeq - dexseq_count.py issue
genomicfeatures dexseq dexseq_count written 4 months ago by marija.durdevic0 • updated 11 weeks ago by hazards0
9
votes
2
answers
2.8k
views
6 follow
2
answers
Differential expression analysis starting from TPM data
R tpm written 11 months ago by cahidora20 • updated 11 months ago by Gordon Smyth34k
8
votes
3
answers
328
views
6 follow
3
answers
17
votes
1
answer
271
views
6 follow
1
answer
How to check the read length for all the TCGA data samples in GDC?
tcga wes gdc gdc data written 3 months ago by Biologist70 • updated 3 months ago by Sean Davis21k
2
votes
2
answers
1.7k
views
5 follow
2
answers
5
votes
2
answers
563
views
5 follow
2
answers
biomaRt error in getBM for hsapiens_gene_ensembl
biomart written 7 months ago by rbacher10 • updated 7 months ago by romicakerketta0
2
votes
0
answers
325
views
5 follow
0
answers
3
votes
2
answers
279
views
5 follow
2
answers
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