3
votes
4
answers
6.9k
views
5 follow
4
answers
DESeq2 installation error
installation written 2.4 years ago by seeker0 • updated 3 months ago by Cheng-Yuan Kao80
18
votes
4
answers
5.1k
views
4
answers
DESeq2 for ChIP-seq differential peaks
chipseq deseq deseq2 written 2.4 years ago by tangming200590 • updated 6 months ago by k.vitting.seerup20
0
votes
4
answers
5.0k
views
4
answers
unable to install package
written 4.2 years ago by Guest User12k • updated 11 months ago by amsindra0
4
votes
3
answers
4.2k
views
3
answers
Limma: how to get same output as topTable but for all the genes ?
limma toptable written 9.1 years ago by Daren Tan160 • updated 5 months ago by Gordon Smyth32k
5
votes
2
answers
4.0k
views
2
answers
Heatmap Plotting in R
R bioconductor heatmap written 2.5 years ago by Deepak Tanwar10
10
votes
11
answers
3.7k
views
17 follow
11
answers
readCufflinks problem with extdata
cummerbund written 6 months ago by biakemi30 • updated 3 months ago by markus.ball10
22
votes
2
answers
3.5k
views
5 follow
2
answers
6
votes
3
answers
3.5k
views
3
answers
Confused in the usage of formula in DESeq or DESeq2
deseq deseq2 written 3.2 years ago by skyoflcz10 • updated 7 months ago by bio200160
17
votes
4
answers
3.4k
views
9 follow
4
answers
Removing continuous covariate effects in limma analysis
microarray limma written 2.8 years ago by Pauly Lin80 • updated 4 months ago by Gordon Smyth32k
6
votes
2
answers
3.4k
views
8 follow
2
answers
remove microarray batch effects using Limma
microarray written 7.2 years ago by Xie, Zhi NIH/NHLBI [E]60 • updated 3 months ago by Gordon Smyth32k
4
votes
2
answers
3.3k
views
2
answers
3
votes
4
answers
3.2k
views
4
answers
Volcano plot labeling troubles
limma volcanoplot written 3.2 years ago by mccallionc4030 • updated 5 months ago by Gordon Smyth32k
13
votes
3
answers
2.9k
views
12 follow
3
answers
New function lfcShrink() in DESeq2
deseq2 written 8 months ago by Michael Love15k
4
votes
4
answers
2.8k
views
6 follow
4
answers
0
votes
1
answer
2.5k
views
1
answer
Limma, SAM and Fold Change Calculation
affy limma gcrma siggenes written 10.5 years ago by Peter White70 • updated 9 months ago by Gordon Smyth32k
2
votes
2
answers
2.3k
views
2
answers
BiocParallel/scater warning after move to R 3.4.0
biocparallel scater written 8 months ago by nhejazi0 • updated 6 months ago by andrew.blake20
1
vote
1
answer
2.2k
views
1
answer
0
votes
1
answer
2.2k
views
1
answer
removeBatchEffect options: design and covariates
limma removebatcheffect written 3.4 years ago by Rao,Xiayu530 • updated 4 months ago by Gordon Smyth32k
2
votes
6
answers
2.2k
views
6
answers
StringTie + Ballgown: handling biological replicates
ballgown stringtie written 22 months ago by bhawley199110 • updated 10 months ago by linda.boshans0
28
votes
7
answers
1.9k
views
14 follow
7
answers
[FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer gviz written 11 months ago by Ramiro Magno80 • updated 6 months ago by aina.jene10
8
votes
0
answers
1.9k
views
6 follow
0
answers
1
vote
2
answers
1.9k
views
2
answers
DiffBind for ATAC-seq
diffbind peak finding macs atac-seq macs2 written 16 months ago by igor20 • updated 10 months ago by kennethcondon200710
3
votes
2
answers
1.8k
views
2
answers
1
vote
2
answers
1.8k
views
2
answers
Ballgown up and down regulated genes
differential expression ballgown written 24 months ago by psbpedrobarbosa0 • updated 8 months ago by kapeelc0
10
votes
1
answer
1.7k
views
5 follow
1
answer
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 2.6 years ago by Sean Davis21k • updated 3 months ago by Paul Harrison60
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