20
votes
3
answers
10.0k
views
25 follow
3
answers
New function lfcShrink() in DESeq2
deseq2 written 2.5 years ago by Michael Love25k • updated 9 weeks ago by Micheal Stark0
20
votes
0
answers
6.3k
views
23 follow
0
answers
7
votes
1
answer
3.9k
views
14 follow
1
answer
16
votes
2
answers
5.7k
views
13 follow
2
answers
using duplicateCorrelation with limma+voom for RNA-seq data
limma voom written 5.4 years ago by John Blischak170 • updated 4.4 years ago by Gordon Smyth38k
15
votes
0
answers
16k
views
11 follow
0
answers
25
votes
4
answers
6.4k
views
18 follow
4
answers
Removing continuous covariate effects in limma analysis
microarray limma written 4.6 years ago by Pauly Lin110 • updated 2.1 years ago by Gordon Smyth38k
14
votes
1
answer
783
views
12 follow
1
answer
7
votes
0
answers
1.5k
views
9 follow
0
answers
14
votes
2
answers
7.2k
views
14 follow
2
answers
remove microarray batch effects using Limma
microarray written 9.0 years ago by Xie, Zhi NIH/NHLBI [E]90 • updated 2.0 years ago by Gordon Smyth38k
12
votes
2
answers
3.9k
views
9 follow
2
answers
18
votes
0
answers
5.3k
views
11 follow
0
answers
Tutorial: Bioconductor on Coursera
tutorial mooc written 4.1 years ago by Kasper Daniel Hansen6.4k • updated 19 months ago by ifmrdatascience0
10
votes
2
answers
3.4k
views
8 follow
2
answers
CAMERA error: $ operator not defined for this S4 class
camera software error written 4.3 years ago by scott.walmsley60 • updated 4.3 years ago by ckuhl20
14
votes
2
answers
7.1k
views
14 follow
2
answers
40
votes
2
answers
36k
views
21 follow
2
answers
conceptual question about FDR, FDR adjusted p-value and q-value
qvalue fdr written 6.8 years ago by Jack Luo410 • updated 3.0 years ago by Gordon Smyth38k
6
votes
1
answer
176
views
8 follow
1
answer
6
votes
0
answers
2.4k
views
8 follow
0
answers
9
votes
1
answer
12k
views
10 follow
1
answer
DESEq2 comparison with mulitple cell types under 2 conditions
deseq2 multiple factor design written 4.4 years ago by kmu00440 • updated 4.4 years ago by Michael Love25k
7
votes
1
answer
4.1k
views
8 follow
1
answer
Renaming the seqlevels in a transcript database from GenomicFeatures
genomicfeatures written 5.3 years ago by Fong Chun Chan320 • updated 5.3 years ago by Sonali Arora380
5
votes
1
answer
2.4k
views
7 follow
1
answer
Trouble with Tximport
salmon tximport written 3.5 years ago by smithng121530 • updated 3.5 years ago by Michael Love25k
2
votes
0
answers
686
views
5 follow
0
answers
17
votes
1
answer
810
views
6 follow
1
answer
How to check the read length for all the TCGA data samples in GDC?
tcga wes gdc gdc data written 18 months ago by Biologist70 • updated 18 months ago by Sean Davis21k
3
votes
1
answer
691
views
6 follow
1
answer
7
votes
0
answers
1.1k
views
5 follow
0
answers
7
votes
2
answers
4.8k
views
5 follow
2
answers
WGCNA: overlapping colors in plotDendroAndColors?
network wgcna plotdendroandcolors written 5.1 years ago by Keith Hughitt120 • updated 5.1 years ago by Peter Langfelder2.2k
13
votes
2
answers
2.4k
views
9 follow
2
answers
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