20
votes
0
answers
5.8k
views
23 follow
0
answers
17
votes
3
answers
8.8k
views
18 follow
3
answers
New function lfcShrink() in DESeq2
deseq2 written 2.0 years ago by Michael Love23k
11
votes
11
answers
6.4k
views
18 follow
11
answers
readCufflinks problem with extdata
cummerbund written 23 months ago by biakemi40 • updated 20 months ago by markus.ball10
32
votes
2
answers
34k
views
17 follow
2
answers
conceptual question about FDR, FDR adjusted p-value and q-value
qvalue fdr written 6.4 years ago by Jack Luo400 • updated 2.6 years ago by Gordon Smyth37k
12
votes
16
answers
9.4k
views
15 follow
16
answers
RDAVIDWebService Error 301: Moved Permanently
rdavidwebservice david written 3.8 years ago by Vivek.b100 • updated 10 months ago by gevermalc0
15
votes
3
answers
7.1k
views
14 follow
3
answers
Nanostring analysis with limma
limma nanostring written 4.1 years ago by mali salmon330 • updated 4.0 years ago by ker6110
28
votes
7
answers
2.9k
views
14 follow
7
answers
[FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer gviz written 2.3 years ago by Ramiro Magno100 • updated 22 months ago by aina.jene10
7
votes
1
answer
3.3k
views
14 follow
1
answer
14
votes
2
answers
6.5k
views
14 follow
2
answers
10
votes
3
answers
6.3k
views
13 follow
3
answers
pre-ranked GSEA within R?
written 5.3 years ago by Daniel Schmolze50 • updated 2.8 years ago by assaron150
12
votes
2
answers
6.4k
views
13 follow
2
answers
remove microarray batch effects using Limma
microarray written 8.6 years ago by Xie, Zhi NIH/NHLBI [E]90 • updated 19 months ago by Gordon Smyth37k
19
votes
2
answers
3.9k
views
12 follow
2
answers
biomaRt no longer works with proxy after upgrade
biomart rcurl proxy written 3.5 years ago by enricoferrero570 • updated 3.5 years ago by hygine140
19
votes
4
answers
5.8k
views
12 follow
4
answers
Removing continuous covariate effects in limma analysis
microarray limma written 4.1 years ago by Pauly Lin80 • updated 20 months ago by Gordon Smyth37k
14
votes
1
answer
599
views
12 follow
1
answer
16
votes
3
answers
13k
views
11 follow
3
answers
Batch correction in DESeq2
rnaseq deseq2 combat removebatcheffect() batch effect written 3.4 years ago by AB40 • updated 3.0 years ago by adam0
18
votes
0
answers
4.9k
views
11 follow
0
answers
Tutorial: Bioconductor on Coursera
tutorial mooc written 3.7 years ago by Kasper Daniel Hansen6.4k • updated 14 months ago by ifmrdatascience0
16
votes
6
answers
3.0k
views
11 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 3.2 years ago by florian.noack60 • updated 18 months ago by Rory Stark2.8k
10
votes
5
answers
2.6k
views
10 follow
5
answers
28
votes
4
answers
3.1k
views
10 follow
4
answers
22
votes
2
answers
12k
views
10 follow
2
answers
Mapping genome regions to gene symbols
gene symbol tcga cnv coordinate written 4.1 years ago by NS50 • updated 4.0 years ago by pshannon80
9
votes
1
answer
11k
views
10 follow
1
answer
DESEq2 comparison with mulitple cell types under 2 conditions
deseq2 multiple factor design written 4.0 years ago by kmu00440 • updated 4.0 years ago by Michael Love23k
21
votes
6
answers
8.1k
views
10 follow
6
answers
Problem with biomart's listMarts function
biomart bug written 3.5 years ago by Johannes Rainer1.4k • updated 3.0 years ago by Paul Shannon370
13
votes
5
answers
7.6k
views
10 follow
5
answers
RNA-Seq, generate batch-free count matrix
edger sva written 4.8 years ago by Brian Haas90 • updated 4.6 years ago by Gordon Smyth37k
16
votes
2
answers
8.6k
views
9 follow
2
answers
13
votes
2
answers
860
views
9 follow
2
answers
Camera and ROAST
limma written 17 months ago by Nuno Pires20 • updated 17 months ago by Gordon Smyth37k
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