2
votes
4
answers
11k
views
8 follow
4
answers
DEseq2 time-series design.
timecourse deseq2 design written 4.9 years ago by shao80 • updated 3 months ago by simon baldwin0
20
votes
3
answers
9.9k
views
25 follow
3
answers
New function lfcShrink() in DESeq2
deseq2 written 2.4 years ago by Michael Love25k • updated 8 weeks ago by Micheal Stark0
1
vote
1
answer
7.2k
views
1
answer
Single Sample GSEA (ssGSEA) and dynamic range of expression
gsva piano ssgsea egsea written 2.2 years ago by sina.nassiri70 • updated 6 months ago by gabriel.rosser20
1
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1
answer
5.3k
views
1
answer
14
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1
answer
4.4k
views
5 follow
1
answer
Error: Bioconductor version '3.8' requires R version '3.5'
software error written 5 months ago by romanowska.j10 • updated 5 months ago by Mike Smith4.0k
14
votes
5
answers
4.3k
views
12 follow
5
answers
3
votes
3
answers
3.9k
views
3
answers
7
votes
1
answer
3.9k
views
14 follow
1
answer
5
votes
3
answers
3.5k
views
3
answers
How to remove out of bound rows from granges
granges grangeslist written 4.0 years ago by vinod.acear40 • updated 11 weeks ago by balwierz40
15
votes
1
answer
2.4k
views
1
answer
Tutorial: Updated Support Site Editor
tutorial support.bioconductor.org markdown editor updates written 8 months ago by shepherl ♦♦ 1.5k • updated 7 months ago by lisaolley910
12
votes
2
answers
2.1k
views
6 follow
2
answers
Plot ggplot2 and ggbio Images Together
ggbio ggplot2 cowplot written 4.3 years ago by andrew.j.skelton73320 • updated 11 weeks ago by Assa Yeroslaviz1.4k
4
votes
1
answer
2.1k
views
5 follow
1
answer
[sva] Error in density.default(x, adjust = adj) : 'x' contains missing values
sva written 2.0 years ago by anton.kratz60 • updated 8 months ago by Benjamin_2013140
3
votes
3
answers
1.9k
views
3
answers
AnnotationHub corrupt database
annotationhub written 4.2 years ago by Koen Van den Berge170 • updated 7 months ago by shepherl ♦♦ 1.5k
4
votes
5
answers
1.8k
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5
answers
edgeR time series analysis with no replicates
edger written 4.1 years ago by sirintra0 • updated 3 hours ago by owuorerick0
12
votes
2
answers
1.8k
views
9 follow
2
answers
differential expression analysis of htseq data with edgeR/voom
limma edger voom htseq rnaseq123 written 2.4 years ago by wd30 • updated 9 months ago by Gordon Smyth38k
3
votes
3
answers
1.6k
views
3
answers
What is colData? How do I make one?
deseq2 coldata written 11 months ago by mjrarcher0 • updated 11 months ago by swbarnes2330
0
votes
5
answers
1.5k
views
5
answers
Rhtslib - install error
error installation rhtslib zlib written 11 months ago by boboshaq0 • updated 21 days ago by leoadam0140
0
votes
2
answers
1.5k
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2
answers
CRISPRseek question on scoring
crisprseek written 5.2 years ago by Julie Zhu4.0k
2
votes
2
answers
1.4k
views
2
answers
15
votes
3
answers
1.4k
views
8 follow
3
answers
DESeq2 1.20.0 lfcshrink function
deseq2 differential expression logfoldchange lfcthreshold lfcshrink written 15 months ago by emi.sch20 • updated 3 months ago by yusuf.zhc0
1
vote
1
answer
1.3k
views
8 follow
1
answer
design matrix with limma
limma written 10.1 years ago by Diya v20 • updated 26 days ago by kobayotay0
0
votes
2
answers
1.3k
views
2
answers
how to handle missing data for SampleTable in DESeq2
deseq2 sample_table missing data written 4.5 years ago by anpham0 • updated 8 months ago by g.wang20
5
votes
1
answer
1.2k
views
1
answer
non-integer counts for edgeR
edger written 7.4 years ago by Gordon Smyth38k
1
vote
1
answer
1.2k
views
1
answer
4
votes
1
answer
1.2k
views
1
answer
summarize scores of GRanges into bins
genomicranges grangeslist findoverlaps bin written 2.1 years ago by Assa Yeroslaviz1.4k • updated 11 months ago by Jenny HT Lee0
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