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News:
List of Deprecated Packages for Bioc3.18
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8 months ago • updated 19 hours ago
shepherl
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18 days ago • updated 6 days ago
shepherl
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90
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12 days ago
cv.jam.zhxf17875
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13 days ago
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Awards
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26 days ago • updated 13 days ago
shepherl
3.8k
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News:
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BioC2024
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Bioconductor
updated 2 hours ago by
howell
• 0 • written 28 days ago by
Maria Doyle
▴ 70
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0
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84
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Online course: Mass Spectrometry and Proteomics with R/Bioconductor
MSnbase
14 days ago
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▴ 10
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110
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News:
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BioC2024
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Community
17 days ago
Maria Doyle
▴ 70
0
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0
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107
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News:
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Conference
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4 weeks ago
Maria Doyle
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2
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7 weeks ago
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2
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1
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199
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updated 6 weeks ago by
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• 0 • written 8 weeks ago by
shepherl
3.8k
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0
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146
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News:
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kohler.d
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3
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12 weeks ago
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▴ 10
5
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1
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375
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News:
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written 4 months ago by
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3.8k
2
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0
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424
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4 months ago
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▴ 70
0
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222
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Bioconductor
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3.8k
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0
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304
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4 months ago
Wolfgang Huber
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0
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0
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305
views
News:
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▴ 10
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4
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597
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News:
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updated 5 months ago by
Guido Hooiveld
★ 3.9k • written 5 months ago by
shepherl
3.8k
1
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0
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312
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5 months ago
kayla.interdonato
▴ 160
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342
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6 months ago
shepherl
3.8k
1
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0
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527
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News:
News: BioCAsia2023 Abstract Submission & Registration Now Open!
Events
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6 months ago
Maria Doyle
▴ 70
0
votes
0
replies
374
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News:
Bioconductor.org website new design - We Need Your Input!
Bioconductor
Community
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7 months ago
Maria Doyle
▴ 70
0
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0
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14
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Spam:
Spreading Smiles with Group Greeting Cards!
CARNIVAL
7 months ago
carterethan745
0
0
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1
reply
1.3k
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News:
News:Ensembl 110 has been released
ensembldb
biomaRt
updated 8 months ago by
Michael Love
41k • written 8 months ago by
Benjamin
▴ 30
0
votes
0
replies
397
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News:
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Bioconductor
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8 months ago
Maria Doyle
▴ 70
0
votes
0
replies
466
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News:
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Bioconductor
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8 months ago
info
▴ 10
1
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0
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328
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News:
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9 months ago
shepherl
3.8k
0
votes
2
replies
782
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News:
List of Deprecated Packages for Bioc3.17
Bioconductor
Deprecation
Devel
devel
11 months ago • updated 9 months ago
shepherl
3.8k
0
votes
2
replies
1.0k
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News:
European Bioconductor Conference 2023 planning
Europe
Conference
EuroBioC
Events
News
updated 7 hours ago by
william
• 0 • written 17 months ago by
Maria Doyle
▴ 70
0
votes
0
replies
319
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News:
May 31st is the last day to nominate for Bioc2023 Awards!
Bioconductor
Awards
Bioc2023
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9 months ago
shepherl
3.8k
0
votes
0
replies
409
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News:
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Bioconductor
Community
BioC2023
9 months ago
Maria Doyle
▴ 70
1
vote
0
replies
540
views
News:
Last Week to Nominate for Bioc2023 Awards!
Bioconductor
Bioc2023
Recognition
Awards
10 months ago
shepherl
3.8k
0
votes
0
replies
433
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News:
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Bioconductor
Recognition
Bioc2023
Awards
10 months ago
shepherl
3.8k
0
votes
0
replies
476
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News:
Bioconductor Community Engagement, Outreach, and Diversity Award
Awards
Bioconductor
Bioc2023
Recognition
10 months ago
shepherl
3.8k
0
votes
0
replies
483
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News:
Bioconductor Long-term Contribution Award
Bioc2023
Bioconductor
Awards
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10 months ago
shepherl
3.8k
0
votes
0
replies
460
views
News:
Nominations for Bioconductor 2023 Awards!
Awards
Bioconductor
Bioc2023
Recognition
11 months ago • updated 10 months ago
shepherl
3.8k
0
votes
0
replies
428
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News:
course - single-cell RNAseq data analysis with R and Bioconductor
Workshop
scRNAseq
10 months ago
info
▴ 10
0
votes
0
replies
1.0k
views
News:
Join the Technical Advisory Board
Bioconductor
News
Organization
10 months ago
Maria Doyle
▴ 70
1
vote
8
replies
1.4k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 5.0 years ago by
shepherl
3.8k
0
votes
0
replies
539
views
News:
RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
Bioconductor
Event
Community
Training
10 months ago
Maria Doyle
▴ 70
0
votes
0
replies
445
views
News:
Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
Training
Bioconductor
Event
Community
Tutorial
10 months ago
Maria Doyle
▴ 70
0
votes
0
replies
522
views
News:
Bioconductor 3.17 is Released!
Packages
Release
Bioconductor
Software
10 months ago
shepherl
3.8k
1
vote
0
replies
468
views
News:
Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
Training
Bioconductor
Event
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News
10 months ago
Maria Doyle
▴ 70
1
vote
0
replies
690
views
News:
Biological Data Science summer school 11-16 June in Brixen/Bressanone.
csama
11 months ago
Wolfgang Huber
★ 13k
0
votes
0
replies
466
views
News:
EuroBioC2023 abstract submission closing soon!
presentation
EuroBioc2023
Conference
community
Bioconductor
11 months ago
Maria Doyle
▴ 70
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Comment: DEG Filtering
by
Gordon Smyth
50k
RMA normalization is good but batch correction using NOISeq isn't right. Data shouldn't be batch corrected before the limma analysis and NO…
Answer: maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicat
by
snijesh
▴ 20
You can try: using `read.delim` or `fread`. ``` my_maf = data.table::fread("path/to/maf/sample.maf") my_maf = read.maf(maf = my_maf) …
Comment: DEG Filtering
by
Amit
• 0
Hi Gordon, Thank you for your response and advice. I want to analyze Dataset GSE18090 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi) whic…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
Gordon Smyth
50k
Yes, that is a quote from [A guide to creating design matrices for gene expression experiments](https://bioconductor.org/packages/release/w…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
JKim
• 0
Thank you. I think I found why the order matters. > Although an intercept-free design matrix has been coded using the 0+ notation, the in…
Votes
C: How to check that the reads in two fastq files are in the same order
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
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Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
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