2
votes
2
answers
6.3k
views
2
answers
Error in file(con, “r”) : cannot open the connection
phyloseq R import_biom otu qiime written 2.1 years ago by moanam0 • updated 2.1 years ago by mcmurdie20
1
vote
2
answers
4.3k
views
2
answers
Integrating DESeq2 and TopGO for Enrichment
rnaseq go deseq2 R written 2.8 years ago by nw3280 • updated 2.8 years ago by Bernd Klaus470
5
votes
2
answers
3.8k
views
2
answers
Heatmap Plotting in R
R bioconductor heatmap written 2.3 years ago by Deepak Tanwar10
8
votes
3
answers
3.7k
views
5 follow
3
answers
1
vote
2
answers
3.6k
views
2
answers
R 3.2.0 problem with DESeq2 - Hmisc error
deseq2 software error R written 2.6 years ago by rclaire0 • updated 2.6 years ago by Steve Lianoglou12k
3
votes
2
answers
3.6k
views
2
answers
1
vote
2
answers
3.6k
views
2
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Heatmap with error message: `x' must be a numeric matrix
R heatmap numericmatrix written 20 months ago by ghk0 • updated 20 months ago by Assa Yeroslaviz1.3k
1
vote
1
answer
3.5k
views
1
answer
Undertanding how DESeq2 handles multiple test conditions
rnaseq deseq2 R written 2.8 years ago by nw3280 • updated 2.8 years ago by Ryan C. Thompson6.1k
5
votes
3
answers
2.7k
views
5 follow
3
answers
2
votes
1
answer
2.5k
views
1
answer
DEseq2 - Use normalized DEseq2 counts to plot most expressed genes per group
rnaseq deseq2 R written 22 months ago by Bstn1320 • updated 22 months ago by Michael Love15k
4
votes
2
answers
2.0k
views
2
answers
getGEO - cannot Open URL issue
geoquery R getgeo written 2.1 years ago by alptaciroglu40
6
votes
4
answers
1.9k
views
4
answers
10
votes
2
answers
1.9k
views
2
answers
3
votes
1
answer
1.9k
views
1
answer
3
votes
2
answers
1.9k
views
2
answers
4
votes
1
answer
1.9k
views
1
answer
3
votes
2
answers
1.6k
views
2
answers
0
votes
1
answer
1.4k
views
1
answer
explanation of makeContrasts function of limma package
geneexpression microarray limma R written 2.3 years ago by elisa.micarelli0 • updated 2.3 years ago by Aaron Lun17k
5
votes
2
answers
1.4k
views
2
answers
2
votes
1
answer
1.4k
views
1
answer
cummeRbund change point size in volcano plot
cummerbund R volcanoplot ggplot2 size written 3.0 years ago by ianmisner1720 • updated 3.0 years ago by James W. MacDonald45k
1
vote
1
answer
1.4k
views
1
answer
Getting HGNC gene names from Ensembl transcript IDs (e.g., ENST0000...)
rnaseq biomart R written 2.0 years ago by kmuench20 • updated 2.0 years ago by Johannes Rainer1.1k
4
votes
1
answer
1.3k
views
1
answer
Connection Refused on port 9000 - RCytoscape
network rcytoscape R graphbam object written 23 months ago by alptaciroglu40 • updated 23 months ago by Dan Tenenbaum ♦♦ 8.2k
0
votes
1
answer
1.3k
views
1
answer
Error in FUN(X[[i]], ...) : subscript out of bounds
R bioconductor gothic written 2.5 years ago by sv3800 • updated 2.4 years ago by Vicky_Tche0
4
votes
3
answers
1.3k
views
3
answers
0
votes
1
answer
1.2k
views
1
answer
Convert Expression Set into a Matrix or Data Frame
microarray biobase affy R written 22 months ago by hshabbeer.090 • updated 22 months ago by Diego Diez700
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