2
votes
2
answers
7.1k
views
2
answers
Error in file(con, “r”) : cannot open the connection
phyloseq R import_biom otu qiime written 2.4 years ago by moanam0 • updated 2.4 years ago by mcmurdie20
1
vote
2
answers
5.0k
views
2
answers
Integrating DESeq2 and TopGO for Enrichment
rnaseq go deseq2 R written 3.0 years ago by nw3280 • updated 3.0 years ago by Bernd Klaus480
1
vote
2
answers
4.4k
views
2
answers
Heatmap with error message: `x' must be a numeric matrix
R heatmap numericmatrix written 23 months ago by ghk0 • updated 23 months ago by Assa Yeroslaviz1.3k
5
votes
2
answers
4.2k
views
2
answers
Heatmap Plotting in R
R bioconductor heatmap written 2.6 years ago by Deepak Tanwar10
1
vote
1
answer
4.1k
views
1
answer
Undertanding how DESeq2 handles multiple test conditions
rnaseq deseq2 R written 3.0 years ago by nw3280 • updated 3.0 years ago by Ryan C. Thompson6.3k
3
votes
2
answers
4.1k
views
2
answers
2
votes
2
answers
3.9k
views
2
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R 3.2.0 problem with DESeq2 - Hmisc error
deseq2 software error R written 2.8 years ago by rclaire0 • updated 2.8 years ago by Steve Lianoglou12k
8
votes
3
answers
3.8k
views
5 follow
3
answers
2
votes
1
answer
3.1k
views
1
answer
DEseq2 - Use normalized DEseq2 counts to plot most expressed genes per group
rnaseq deseq2 R written 2.1 years ago by Bstn1320 • updated 2.1 years ago by Michael Love16k
5
votes
3
answers
2.8k
views
5 follow
3
answers
3
votes
2
answers
2.5k
views
2
answers
4
votes
1
answer
2.4k
views
1
answer
4
votes
2
answers
2.4k
views
2
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getGEO - cannot Open URL issue
geoquery R getgeo written 2.4 years ago by alptaciroglu40
3
votes
2
answers
2.2k
views
2
answers
6
votes
4
answers
2.1k
views
4
answers
3
votes
1
answer
2.1k
views
1
answer
10
votes
2
answers
2.1k
views
2
answers
1
vote
1
answer
1.8k
views
1
answer
Getting HGNC gene names from Ensembl transcript IDs (e.g., ENST0000...)
rnaseq biomart R written 2.3 years ago by kmuench20 • updated 2.3 years ago by Johannes Rainer1.2k
5
votes
2
answers
1.6k
views
2
answers
1
vote
1
answer
1.6k
views
1
answer
explanation of makeContrasts function of limma package
geneexpression microarray limma R written 2.6 years ago by elisa.micarelli10 • updated 2.6 years ago by Aaron Lun18k
4
votes
1
answer
1.6k
views
1
answer
Connection Refused on port 9000 - RCytoscape
network rcytoscape R graphbam object written 2.2 years ago by alptaciroglu40 • updated 2.2 years ago by Dan Tenenbaum ♦♦ 8.2k
0
votes
1
answer
1.6k
views
1
answer
Convert Expression Set into a Matrix or Data Frame
microarray biobase affy R written 2.1 years ago by hshabbeer.090 • updated 2.1 years ago by Diego Diez720
2
votes
1
answer
1.5k
views
1
answer
cummeRbund change point size in volcano plot
cummerbund R volcanoplot ggplot2 size written 3.2 years ago by ianmisner1720 • updated 3.2 years ago by James W. MacDonald45k
0
votes
1
answer
1.5k
views
1
answer
Error in FUN(X[[i]], ...) : subscript out of bounds
R bioconductor gothic written 2.8 years ago by sv3800 • updated 2.7 years ago by Vicky_Tche0
7
votes
1
answer
1.4k
views
1
answer
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