2
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2
answers
8.3k
views
2
answers
Error in file(con, “r”) : cannot open the connection
phyloseq R import_biom otu qiime written 2.7 years ago by moanam0 • updated 2.7 years ago by mcmurdie20
1
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2
answers
6.0k
views
2
answers
Heatmap with error message: `x' must be a numeric matrix
R heatmap numericmatrix written 2.3 years ago by Biologist70 • updated 2.3 years ago by Assa Yeroslaviz1.4k
2
votes
2
answers
6.0k
views
5 follow
2
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Integrating DESeq2 and TopGO for Enrichment
rnaseq go deseq2 R written 3.4 years ago by nw32810 • updated 3.4 years ago by Bernd Klaus480
1
vote
1
answer
4.9k
views
1
answer
Undertanding how DESeq2 handles multiple test conditions
rnaseq deseq2 R written 3.4 years ago by nw32810 • updated 3.4 years ago by Ryan C. Thompson6.8k
5
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2
answers
4.7k
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2
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Heatmap Plotting in R
R bioconductor heatmap written 2.9 years ago by Deepak Tanwar10
4
votes
2
answers
4.7k
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2
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2
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1
answer
4.3k
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1
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DEseq2 - Use normalized DEseq2 counts to plot most expressed genes per group
rnaseq deseq2 R written 2.4 years ago by Bstn1320 • updated 2.4 years ago by Michael Love18k
2
votes
2
answers
4.2k
views
2
answers
R 3.2.0 problem with DESeq2 - Hmisc error
deseq2 software error R written 3.1 years ago by rclaire0 • updated 3.1 years ago by Steve Lianoglou12k
8
votes
3
answers
4.0k
views
5 follow
3
answers
3
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2
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3.8k
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2
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5
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3
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3.0k
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3
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4
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1
answer
3.0k
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1
answer
4
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2
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2.9k
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2
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getGEO - cannot Open URL issue
geoquery R getgeo written 2.7 years ago by alptaciroglu40
9
votes
2
answers
2.5k
views
6 follow
2
answers
Differential expression analysis starting from TPM data
R tpm written 10 months ago by cahidora20 • updated 10 months ago by Gordon Smyth33k
3
votes
2
answers
2.5k
views
2
answers
7
votes
1
answer
2.4k
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1
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3
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1
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2.4k
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1
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6
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4
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2.4k
views
4
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1
vote
1
answer
2.3k
views
1
answer
Getting HGNC gene names from Ensembl transcript IDs (e.g., ENST0000...)
rnaseq biomart R written 2.6 years ago by kmuench30 • updated 2.6 years ago by Johannes Rainer1.3k
10
votes
2
answers
2.2k
views
2
answers
5
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2
answers
2.0k
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2
answers
0
votes
1
answer
2.0k
views
1
answer
Convert Expression Set into a Matrix or Data Frame
microarray biobase affy R written 2.4 years ago by hshabbeer.090 • updated 2.4 years ago by Diego Diez730
1
vote
1
answer
1.8k
views
1
answer
explanation of makeContrasts function of limma package
geneexpression microarray limma R written 2.9 years ago by elisa.micarelli10 • updated 2.9 years ago by Aaron Lun19k
4
votes
1
answer
1.8k
views
1
answer
Connection Refused on port 9000 - RCytoscape
network rcytoscape R graphbam object written 2.5 years ago by alptaciroglu40 • updated 2.5 years ago by Dan Tenenbaum ♦♦ 8.2k
7
votes
1
answer
1.7k
views
1
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