2
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2
answers
9.0k
views
2
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Error in file(con, “r”) : cannot open the connection
phyloseq R import_biom otu qiime written 2.9 years ago by moanam0 • updated 2.9 years ago by mcmurdie20
1
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2
answers
7.5k
views
2
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Heatmap with error message: `x' must be a numeric matrix
R heatmap numericmatrix written 2.5 years ago by Biologist70 • updated 2.5 years ago by Assa Yeroslaviz1.4k
2
votes
2
answers
6.8k
views
5 follow
2
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Integrating DESeq2 and TopGO for Enrichment
rnaseq go deseq2 R written 3.6 years ago by nw32810 • updated 3.6 years ago by Bernd Klaus490
1
vote
1
answer
5.4k
views
1
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Undertanding how DESeq2 handles multiple test conditions
rnaseq deseq2 R written 3.6 years ago by nw32810 • updated 3.6 years ago by Ryan C. Thompson6.9k
3
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1
answer
5.3k
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1
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DEseq2 - Use normalized DEseq2 counts to plot most expressed genes per group
rnaseq deseq2 R written 2.7 years ago by Bstn1320 • updated 2.7 years ago by Michael Love19k
3
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2
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5.2k
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2
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4
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2
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2
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6
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2
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2
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Heatmap Plotting in R
R bioconductor heatmap written 3.2 years ago by Deepak Tanwar10
2
votes
2
answers
4.3k
views
2
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R 3.2.0 problem with DESeq2 - Hmisc error
deseq2 software error R written 3.4 years ago by rclaire0 • updated 3.4 years ago by Steve Lianoglou12k
8
votes
3
answers
4.1k
views
5 follow
3
answers
11
votes
2
answers
3.9k
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7 follow
2
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Differential expression analysis starting from TPM data
R tpm written 13 months ago by cahidora20 • updated 13 months ago by Gordon Smyth35k
4
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1
answer
3.4k
views
1
answer
7
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1
answer
3.4k
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1
answer
4
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2
answers
3.2k
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2
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getGEO - cannot Open URL issue
geoquery R getgeo written 2.9 years ago by alptaciroglu50
5
votes
3
answers
3.1k
views
5 follow
3
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7
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1
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2.8k
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1
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3
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2
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2
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1
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1
answer
2.7k
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1
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Getting HGNC gene names from Ensembl transcript IDs (e.g., ENST0000...)
rnaseq biomart R written 2.8 years ago by kmuench30 • updated 2.8 years ago by Johannes Rainer1.3k
3
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1
answer
2.6k
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1
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6
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4
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4
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10
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2
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2.3k
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2
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0
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1
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2.3k
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1
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Convert Expression Set into a Matrix or Data Frame
microarray biobase affy R written 2.7 years ago by hshabbeer.090 • updated 2.7 years ago by Diego Diez730
5
votes
2
answers
2.3k
views
2
answers
1
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1
answer
2.0k
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1
answer
explanation of makeContrasts function of limma package
geneexpression microarray limma R written 3.2 years ago by elisa.micarelli10 • updated 3.2 years ago by Aaron Lun21k
5
votes
1
answer
1.9k
views
1
answer
Connection Refused on port 9000 - RCytoscape
network rcytoscape R graphbam object written 2.8 years ago by alptaciroglu50 • updated 2.8 years ago by Dan Tenenbaum ♦♦ 8.2k
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