10
votes
3
answers
6.8k
views
6 follow
3
answers
DESeq2: add annotations (from data frame) to DESeqDataSet
annotation deseq2 granges written 4.1 years ago by Darya Vanichkina100 • updated 2.8 years ago by bioprog0
0
votes
1
answer
337
views
5 follow
1
answer
problem read.maimage("Agilent") -limma
annotation limma written 13.3 years ago by Gordon Smyth35k • updated 13.3 years ago by Sean Davis21k
0
votes
1
answer
557
views
5 follow
1
answer
removing packages from the workspace - is this ok?
annotation process written 7.5 years ago by J.delasHeras@ed.ac.uk1.9k • updated 7.5 years ago by Steve Lianoglou12k
6
votes
1
answer
1.6k
views
5 follow
1
answer
3
votes
1
answer
1.9k
views
5 follow
1
answer
filtering probes in affymetrix data
annotation limma written 4.8 years ago by Sabet, Julia A180 • updated 4.8 years ago by James W. MacDonald48k
5
votes
3
answers
3.2k
views
5 follow
3
answers
9
votes
0
answers
3.0k
views
5 follow
0
answers
2
votes
1
answer
1.0k
views
5 follow
1
answer
Goseq supported organism (felcat5) has an error when testing
genesetenrichment annotation goseq written 3.2 years ago by xyliu0020 • updated 3.2 years ago by Nadia Davidson270
6
votes
3
answers
1.2k
views
5 follow
3
answers
Error in .checkKeys(value, Lkeys(x), x@ifnotfound)
annotation drosophila melanogaster gostats error go term written 2.5 years ago by nooshin290 • updated 21 months ago by tlaguna10
0
votes
1
answer
567
views
1
answer
affy Yeast 2.0 annotation
annotation yeast affy limma annbuilder written 13.8 years ago by Jacob Michaelson320 • updated 13.8 years ago by Vincent J. Carey, Jr.6.2k
0
votes
1
answer
441
views
1
answer
0
votes
3
answers
496
views
3
answers
0
votes
2
answers
722
views
2
answers
GO over representation analysis
annotation go maanova written 10.2 years ago by Heike Pospisil310 • updated 10.2 years ago by Marc Carlson7.2k
0
votes
1
answer
720
views
1
answer
Retrieve Entrez IDs for enriched GO terms
microarray annotation go limma gostats biomart written 9.2 years ago by Yuan Hao80 • updated 9.2 years ago by Heidi Dvinge2.0k
0
votes
1
answer
558
views
1
answer
package pair "hugene10stv1cdf"/"hugene10stprobeset.db"
annotation cdf written 8.6 years ago by Laurent Gautier2.2k • updated 8.6 years ago by James W. MacDonald48k
0
votes
1
answer
625
views
1
answer
0
votes
2
answers
442
views
2
answers
org.*.eg.db problem
annotation organism written 8.0 years ago by arne.mueller@novartis.com200 • updated 8.0 years ago by Vincent J. Carey, Jr.6.2k
0
votes
1
answer
488
views
1
answer
Wheat annotation
annotation cdf annotationdbi written 6.4 years ago by Guest User12k • updated 6.4 years ago by James W. MacDonald48k
0
votes
1
answer
1.2k
views
1
answer
Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays
annotation cdf written 6.4 years ago by Andreas Heider290 • updated 6.4 years ago by James W. MacDonald48k
1
vote
1
answer
1.0k
views
1
answer
annotation package for Agilent Human GE 4x44K v2 (catalog # G4845A)
annotation written 6.3 years ago by Hari Easwaran240 • updated 6.3 years ago by James W. MacDonald48k
0
votes
2
answers
4.9k
views
2
answers
Analysis of Affymetrix Mouse Gene 2.0 ST arrays
annotation normalization go process oligo written 5.7 years ago by Kamila Naxerova100 • updated 5.7 years ago by James W. MacDonald48k
2
votes
1
answer
2.5k
views
1
answer
Ensembl or Gencode version of TxDb.Hsapiens.UCSC.hg19.knownGene
annotation written 5.1 years ago by Adaikalavan Ramasamy220 • updated 5.1 years ago by James W. MacDonald48k
0
votes
1
answer
984
views
1
answer
GTF file error when using easyRNAseq�
annotation organism bsgenome deseq easyrnaseq written 5.0 years ago by Guest User12k • updated 5.0 years ago by delhomme@embl.de1.2k
4
votes
3
answers
1.8k
views
3
answers
Use R/Bioconductor to match BLAST hits to GO terms?
annotation go blast written 4.1 years ago by Jon Bråte150 • updated 4.1 years ago by Marc Carlson7.2k
1
vote
4
answers
1.2k
views
4
answers
reactome.db: reactome IDs not mapped to pathway names
annotation pathways written 4.0 years ago by Johannes Rainer1.3k • updated 3.6 years ago by willem.ligtenberg150
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