2
votes
2
answers
3.0k
views
2
answers
DiffBind for ATAC-seq
diffbind peak finding macs atac-seq macs2 written 23 months ago by igor20 • updated 16 months ago by YaGalbi20
0
votes
1
answer
1.2k
views
1
answer
Calling differential peaks from ATAC-seq data using DEseq2
deseq2 atac-seq written 8 months ago by zhongjixx0 • updated 8 months ago by Rory Stark2.5k
0
votes
1
answer
840
views
1
answer
DiffBind Normalization by bFullLibrarySize
atac-seq written 2.4 years ago by simonjean43410 • updated 2.4 years ago by Rory Stark2.5k
0
votes
0
answers
833
views
0
answers
1
vote
2
answers
736
views
2
answers
DiffBind R package issue
diffbind atac-seq written 15 months ago by niu.shengyong0 • updated 15 months ago by Rory Stark2.5k
3
votes
1
answer
724
views
1
answer
How to normalize chromatin and RNA-Seq data together ?
sva deseq2 combat atac atac-seq written 17 months ago by g.atla0 • updated 17 months ago by Michael Love18k
1
vote
0
answers
665
views
0
answers
1
vote
2
answers
588
views
2
answers
loading dba.plotVolcano in DiffBind
chipseq diffbind atac-seq rory stark written 15 months ago by andrew.gehrke0 • updated 15 months ago by Rory Stark2.5k
0
votes
2
answers
533
views
2
answers
4
votes
1
answer
432
views
1
answer
Rsubread counting peaks ATACseq
rsubread narrowpeaks featurecounts atac-seq written 8 months ago by j.bergenstrahle80 • updated 8 months ago by Wei Shi2.9k
1
vote
0
answers
397
views
0
answers
0
votes
1
answer
377
views
1
answer
DiffBind: failed to run dba.count in SSH
atac-seq ssh written 14 months ago by zhaolin200420080 • updated 14 months ago by Gord Brown570
0
votes
1
answer
341
views
1
answer
Homer getDiffExpression.pl issue
atac-seq homer written 12 months ago by niu.shengyong0 • updated 12 months ago by Maciej Jończyk0
0
votes
0
answers
318
views
0
answers
2
votes
2
answers
288
views
2
answers
Error When using dba.count() in DiffBind
diffbind dba.count atac-seq written 8 months ago by ew1520 • updated 8 months ago by Gord Brown570
1
vote
1
answer
264
views
1
answer
0
votes
1
answer
249
views
1
answer
Warnings when update DiffBind and running errors
diffbind dba.count atac-seq written 8 months ago by zhaolin200420080 • updated 8 months ago by Rory Stark2.5k
5
votes
1
answer
246
views
1
answer
Filtering for ATAC-seq
edger cqn atac-seq written 11 weeks ago by shankasal0 • updated 11 weeks ago by Aaron Lun20k
4
votes
2
answers
240
views
2
answers
0
votes
0
answers
217
views
0
answers
4
votes
1
answer
216
views
1
answer
DESeq2 design and stats question
deseq deseq2 differential binding analysis atac-seq written 5 months ago by rbronste60 • updated 5 months ago by Michael Love18k
0
votes
2
answers
196
views
2
answers
ATACseqQC memory overflow issue
software error atac-seq atacseqqc written 5 months ago by José Luis Lavín10 • updated 5 months ago by Haibo.Liu0
0
votes
0
answers
177
views
0
answers
0
votes
1
answer
153
views
1
answer
Error with dba.count function code
diffbind dba.count atac-seq written 9 months ago by VCLRAC0010 • updated 9 months ago by Gord Brown570
2
votes
2
answers
103
views
2
answers
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