4
votes
1
answer
274
views
1
answer
Rsubread counting peaks ATACseq
rsubread narrowpeaks featurecounts atac-seq written 5 months ago by j.bergenstrahle70 • updated 5 months ago by Wei Shi2.8k
1
vote
0
answers
550
views
0
answers
0
votes
0
answers
782
views
0
answers
0
votes
1
answer
717
views
1
answer
DiffBind Normalization by bFullLibrarySize
atac-seq written 2.1 years ago by simonjean43410 • updated 2.1 years ago by Rory Stark2.4k
2
votes
2
answers
2.4k
views
2
answers
DiffBind for ATAC-seq
diffbind peak finding macs atac-seq macs2 written 20 months ago by igor20 • updated 13 months ago by YaGalbi20
3
votes
1
answer
603
views
1
answer
How to normalize chromatin and RNA-Seq data together ?
sva deseq2 combat atac atac-seq written 14 months ago by g.atla0 • updated 14 months ago by Michael Love17k
0
votes
0
answers
273
views
0
answers
1
vote
2
answers
496
views
2
answers
loading dba.plotVolcano in DiffBind
chipseq diffbind atac-seq rory stark written 12 months ago by andrew.gehrke0 • updated 12 months ago by Rory Stark2.4k
0
votes
2
answers
450
views
2
answers
1
vote
0
answers
325
views
0
answers
1
vote
2
answers
580
views
2
answers
DiffBind R package issue
diffbind atac-seq written 12 months ago by niu.shengyong0 • updated 12 months ago by Rory Stark2.4k
0
votes
1
answer
320
views
1
answer
DiffBind: failed to run dba.count in SSH
atac-seq ssh written 11 months ago by zhaolin200420080 • updated 11 months ago by Gord Brown570
0
votes
1
answer
294
views
1
answer
Homer getDiffExpression.pl issue
atac-seq homer written 9 months ago by niu.shengyong0 • updated 9 months ago by Maciej Jończyk0
0
votes
1
answer
122
views
1
answer
Error with dba.count function code
diffbind dba.count atac-seq written 6 months ago by VCLRAC0010 • updated 6 months ago by Gord Brown570
1
vote
1
answer
220
views
1
answer
2
votes
2
answers
240
views
2
answers
Error When using dba.count() in DiffBind
diffbind dba.count atac-seq written 5 months ago by ew1520 • updated 5 months ago by Gord Brown570
0
votes
1
answer
747
views
1
answer
Calling differential peaks from ATAC-seq data using DEseq2
deseq2 atac-seq written 5 months ago by zhongjixx0 • updated 5 months ago by Rory Stark2.4k
0
votes
1
answer
194
views
1
answer
Warnings when update DiffBind and running errors
diffbind dba.count atac-seq written 4 months ago by zhaolin200420080 • updated 4 months ago by Rory Stark2.4k
0
votes
0
answers
178
views
0
answers
4
votes
2
answers
197
views
2
answers
0
votes
0
answers
112
views
0
answers
4
votes
1
answer
172
views
1
answer
DESeq2 design and stats question
deseq deseq2 differential binding analysis atac-seq written 12 weeks ago by rbronste60 • updated 12 weeks ago by Michael Love17k
0
votes
2
answers
121
views
2
answers
ATACseqQC memory overflow issue
software error atac-seq atacseqqc written 9 weeks ago by José Luis Lavín10 • updated 8 weeks ago by Haibo.Liu0
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