Showing: bamreset
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how can I tell if a RNAseq BAM file is paired end or single end ?
ngs bam written 4.6 years ago by stephen6630 • updated 4.6 years ago by Sonali Arora380
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3
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3
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0
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3
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3
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SummarizeOverlaps in R
bam summarizeoverlaps rstudio written 4.0 years ago by Lillyhchen10 • updated 4.0 years ago by Jake60
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2
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1.3k
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2
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Processing bam files by read group
rsamtools bam read group written 4.7 years ago by Thomas Sandmann70 • updated 4.5 years ago by Nathaniel Hayden180
4
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2
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1.2k
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2
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scanBam on BamSampler supposed to be fast?
rsamtools bam written 4.5 years ago by Johannes Rainer1.4k • updated 4.5 years ago by Martin Morgan ♦♦ 23k
0
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2
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677
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2
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Graphing coverage() results
ggbio genomicalignments bam written 4.4 years ago by gen30
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2
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1.2k
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2
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Reading alignments above a mapq threshold from BAM files
rsamtools bam written 4.1 years ago by Johannes Rainer1.4k • updated 4.1 years ago by Martin Morgan ♦♦ 23k
3
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2
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1.0k
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2
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about VCF and BAM files
bam snv written 3.3 years ago by Bogdan560
2
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2
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719
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2
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8
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2
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559
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2
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Counting ambiguously mapped reads per feature
rnaseq genomicranges rsamtools genomicalignments bam written 3.0 years ago by rubi90 • updated 3.0 years ago by Gordon Smyth38k
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1.1k
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1
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6
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1.2k
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1
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1
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1
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719
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1
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Conversion of BSgenome format to GRanges format?
bsgenome granges bam written 4.5 years ago by pterry0 • updated 4.5 years ago by James W. MacDonald50k
5
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1
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2.8k
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1
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1
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655
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1
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removing reads from coverage() calculation.
genomicranges rsamtools bam written 4.4 years ago by gen30 • updated 4.4 years ago by Martin Morgan ♦♦ 23k
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1
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828
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1
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4
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1
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672
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1
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Slice of aligned sequences
genomicalignments granges bam written 4.1 years ago by Thomas Poulsen10 • updated 4.1 years ago by Hervé Pagès ♦♦ 14k
2
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1
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641
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1
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0
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1
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891
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1
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1
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1
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1.1k
views
1
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Rsamtools memory leak
iranges rsamtools granges bam scanbam written 3.8 years ago by mhills10
3
votes
1
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756
views
1
answer
Read in specific rows of a BAM file that match a certain RNAME
bam scanbamparam written 3.6 years ago by K50 • updated 3.6 years ago by Martin Morgan ♦♦ 23k
0
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1
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777
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1
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diffHic preparePairs() does not identify paired-end reads
bam paired diffhic preparepairs written 3.4 years ago by ilyco0 • updated 3.4 years ago by Aaron Lun24k
0
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1
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657
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1
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Reading BAM file for RapidR
bam rapidr written 3.3 years ago by Sushant Pawar0 • updated 3.3 years ago by Aaron Lun24k
2
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1
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1.6k
views
1
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