Showing: bamreset
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GUIDEseq bam input
bam guideseq written 8 weeks ago by tomas.rodriguez0 • updated 8 weeks ago by Julie Zhu4.0k
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Convert BAM to FASTQ
bam fastq written 6 months ago by ioannis.vardaxis30 • updated 6 months ago by Martin Morgan ♦♦ 23k
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Speed and memory of custom function using scanBam
rsamtools bam scanbamparam written 12 months ago by António Miguel de Jesus Domingues470 • updated 12 months ago by Martin Morgan ♦♦ 23k
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Plotting coverage from bam files
bam plot written 17 months ago by gv40 • updated 17 months ago by James W. MacDonald51k
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Rsamtools insert size
rsamtools bam samtools bowtie2 written 20 months ago by igor30
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CAGEr BAM files size issue
biostrings cager software error R bam written 2.3 years ago by orzechowska.mag10 • updated 2.2 years ago by Charles Plessy110
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Gviz off-by-one with STAR BAM
coverage gviz bam star off-by-one written 2.6 years ago by bernt.popp0 • updated 2.6 years ago by Martin Morgan ♦♦ 23k
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759
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Gviz sashimi read count
gviz bam read counting sashimi plots sashimi written 2.6 years ago by bernt.popp0 • updated 2.6 years ago by Robert Ivanek640
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4
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bamsignals - bamcoverage has no strand-specific option??
coverage bam bamsignals written 2.7 years ago by gtho12340 • updated 2.7 years ago by helmuth0
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Rsubread featureCounts with strand information
rnaseq rsubread bam written 2.8 years ago by rubi90 • updated 2.8 years ago by Aaron Lun25k
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Plotting only intergenic reads on chromosomes?
genomegraphs rsamtools gviz bam samtools written 3.2 years ago by Mehmet Ilyas Cosacak0 • updated 3.2 years ago by Martin Morgan ♦♦ 23k
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Counting ambiguously mapped reads per feature
rnaseq genomicranges rsamtools genomicalignments bam written 3.2 years ago by rubi90 • updated 3.2 years ago by Gordon Smyth38k
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CopywriteR can't finish calculating copy number
bam copywriter written 3.4 years ago by thestaroceanster0 • updated 3.4 years ago by t.kuilman140
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about VCF and BAM files
bam snv written 3.5 years ago by Bogdan580
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Reading BAM file for RapidR
bam rapidr written 3.6 years ago by Sushant Pawar0 • updated 3.6 years ago by Aaron Lun25k
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diffHic preparePairs() does not identify paired-end reads
bam paired diffhic preparepairs written 3.7 years ago by ilyco0 • updated 3.7 years ago by Aaron Lun25k
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Read in specific rows of a BAM file that match a certain RNAME
bam scanbamparam written 3.8 years ago by K50 • updated 3.8 years ago by Martin Morgan ♦♦ 23k
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Rsamtools memory leak
iranges rsamtools granges bam scanbam written 4.0 years ago by mhills10
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