Showing: bamreset
8
votes
2
answers
591
views
2
answers
Counting ambiguously mapped reads per feature
rnaseq genomicranges rsamtools genomicalignments bam written 3.2 years ago by rubi90 • updated 3.2 years ago by Gordon Smyth38k
4
votes
1
answer
687
views
1
answer
bamsignals - bamcoverage has no strand-specific option??
coverage bam bamsignals written 2.7 years ago by gtho12340 • updated 2.6 years ago by helmuth0
6
votes
1
answer
1.3k
views
1
answer
7
votes
4
answers
3.8k
views
4
answers
how can I tell if a RNAseq BAM file is paired end or single end ?
ngs bam written 4.8 years ago by stephen6630 • updated 4.7 years ago by Sonali Arora380
4
votes
3
answers
881
views
3
answers
1
vote
1
answer
1.1k
views
1
answer
Rsamtools memory leak
iranges rsamtools granges bam scanbam written 3.9 years ago by mhills10
4
votes
1
answer
1.8k
views
1
answer
Rsubread featureCounts with strand information
rnaseq rsubread bam written 2.7 years ago by rubi90 • updated 2.7 years ago by Aaron Lun24k
7
votes
1
answer
176
views
1
answer
Convert BAM to FASTQ
bam fastq written 5 months ago by ioannis.vardaxis30 • updated 5 months ago by Martin Morgan ♦♦ 23k
3
votes
1
answer
1.1k
views
1
answer
1
vote
2
answers
1.3k
views
2
answers
Processing bam files by read group
rsamtools bam read group written 4.9 years ago by Thomas Sandmann70 • updated 4.7 years ago by Nathaniel Hayden180
5
votes
1
answer
2.8k
views
1
answer
5
votes
2
answers
1.3k
views
2
answers
Reading alignments above a mapq threshold from BAM files
rsamtools bam written 4.2 years ago by Johannes Rainer1.5k • updated 4.2 years ago by Martin Morgan ♦♦ 23k
0
votes
3
answers
3.1k
views
3
answers
SummarizeOverlaps in R
bam summarizeoverlaps rstudio written 4.2 years ago by Lillyhchen10 • updated 4.2 years ago by Jake60
1
vote
5
answers
870
views
5
answers
0
votes
1
answer
673
views
1
answer
Reading BAM file for RapidR
bam rapidr written 3.5 years ago by Sushant Pawar0 • updated 3.5 years ago by Aaron Lun24k
2
votes
1
answer
1.7k
views
1
answer
3
votes
1
answer
580
views
1
answer
Plotting only intergenic reads on chromosomes?
genomegraphs rsamtools gviz bam samtools written 3.1 years ago by Mehmet Ilyas Cosacak0 • updated 3.1 years ago by Martin Morgan ♦♦ 23k
0
votes
0
answers
735
views
0
answers
1
vote
1
answer
744
views
1
answer
Gviz sashimi read count
gviz bam read counting sashimi plots sashimi written 2.5 years ago by bernt.popp0 • updated 2.5 years ago by Robert Ivanek640
4
votes
2
answers
1.2k
views
2
answers
scanBam on BamSampler supposed to be fast?
rsamtools bam written 4.7 years ago by Johannes Rainer1.5k • updated 4.7 years ago by Martin Morgan ♦♦ 23k
1
vote
1
answer
754
views
1
answer
Conversion of BSgenome format to GRanges format?
bsgenome granges bam written 4.6 years ago by pterry0 • updated 4.6 years ago by James W. MacDonald51k
1
vote
1
answer
673
views
1
answer
removing reads from coverage() calculation.
genomicranges rsamtools bam written 4.6 years ago by gen30 • updated 4.6 years ago by Martin Morgan ♦♦ 23k
0
votes
2
answers
700
views
2
answers
Graphing coverage() results
ggbio genomicalignments bam written 4.5 years ago by gen30
0
votes
1
answer
875
views
1
answer
0
votes
0
answers
585
views
0
answers
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