Showing: bamreset
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how can I tell if a RNAseq BAM file is paired end or single end ?
ngs bam written 4.4 years ago by stephen6630 • updated 4.4 years ago by Sonali Arora370
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3
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SummarizeOverlaps in R
bam summarizeoverlaps rstudio written 3.9 years ago by Lillyhchen10 • updated 3.9 years ago by Jake60
5
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1
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1
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4
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Rsubread featureCounts with strand information
rnaseq rsubread bam written 2.4 years ago by rubi90 • updated 2.4 years ago by Aaron Lun23k
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Processing bam files by read group
rsamtools bam read group written 4.6 years ago by Thomas Sandmann70 • updated 4.4 years ago by Nathaniel Hayden180
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1.2k
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Reading alignments above a mapq threshold from BAM files
rsamtools bam written 3.9 years ago by Johannes Rainer1.4k • updated 3.9 years ago by Martin Morgan ♦♦ 23k
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1.2k
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4
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1.1k
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scanBam on BamSampler supposed to be fast?
rsamtools bam written 4.3 years ago by Johannes Rainer1.4k • updated 4.3 years ago by Martin Morgan ♦♦ 23k
1
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1
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1
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Rsamtools memory leak
iranges rsamtools granges bam scanbam written 3.6 years ago by mhills10
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1
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1.0k
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1
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3
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1.0k
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about VCF and BAM files
bam snv written 3.1 years ago by Bogdan550
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976
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1
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862
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4
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0
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1
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792
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0
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1
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739
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1
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diffHic preparePairs() does not identify paired-end reads
bam paired diffhic preparepairs written 3.3 years ago by ilyco0 • updated 3.3 years ago by Aaron Lun23k
3
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1
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734
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1
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Read in specific rows of a BAM file that match a certain RNAME
bam scanbamparam written 3.4 years ago by K50 • updated 3.4 years ago by Martin Morgan ♦♦ 23k
1
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1
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692
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1
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Conversion of BSgenome format to GRanges format?
bsgenome granges bam written 4.3 years ago by pterry0 • updated 4.3 years ago by James W. MacDonald50k
2
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2
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686
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2
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1
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1
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683
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1
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Gviz sashimi read count
gviz bam read counting sashimi plots sashimi written 2.2 years ago by bernt.popp0 • updated 2.2 years ago by Robert Ivanek590
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2
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652
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2
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Graphing coverage() results
ggbio genomicalignments bam written 4.2 years ago by gen30
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650
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0
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4
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649
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1
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Slice of aligned sequences
genomicalignments granges bam written 3.9 years ago by Thomas Poulsen10 • updated 3.9 years ago by Hervé Pagès ♦♦ 13k
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