Showing: bamreset
7
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how can I tell if a RNAseq BAM file is paired end or single end ?
ngs bam written 4.8 years ago by stephen6630 • updated 4.8 years ago by Sonali Arora380
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3
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SummarizeOverlaps in R
bam summarizeoverlaps rstudio written 4.3 years ago by Lillyhchen10 • updated 4.3 years ago by Jake60
5
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1
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2.9k
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1
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4
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1
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1
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Rsubread featureCounts with strand information
rnaseq rsubread bam written 2.8 years ago by rubi90 • updated 2.8 years ago by Aaron Lun25k
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1
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1.7k
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1
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4
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3
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1.5k
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3
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1
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2
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1.3k
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Processing bam files by read group
rsamtools bam read group written 5.0 years ago by Thomas Sandmann70 • updated 4.8 years ago by Nathaniel Hayden180
6
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1
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1.3k
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1
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5
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1.3k
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2
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Reading alignments above a mapq threshold from BAM files
rsamtools bam written 4.3 years ago by Johannes Rainer1.5k • updated 4.3 years ago by Martin Morgan ♦♦ 23k
4
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2
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1.2k
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2
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scanBam on BamSampler supposed to be fast?
rsamtools bam written 4.7 years ago by Johannes Rainer1.5k • updated 4.7 years ago by Martin Morgan ♦♦ 23k
1
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1
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1.1k
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1
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Rsamtools memory leak
iranges rsamtools granges bam scanbam written 4.0 years ago by mhills10
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1
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1.1k
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0
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0
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1.1k
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0
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3
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1.1k
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about VCF and BAM files
bam snv written 3.5 years ago by Bogdan580
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1
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919
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1
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0
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1
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887
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1
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1
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5
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885
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5
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0
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1
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809
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1
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diffHic preparePairs() does not identify paired-end reads
bam paired diffhic preparepairs written 3.7 years ago by ilyco0 • updated 3.7 years ago by Aaron Lun25k
3
votes
1
answer
791
views
1
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Read in specific rows of a BAM file that match a certain RNAME
bam scanbamparam written 3.8 years ago by K50 • updated 3.8 years ago by Martin Morgan ♦♦ 23k
2
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2
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771
views
2
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1
vote
1
answer
767
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1
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Conversion of BSgenome format to GRanges format?
bsgenome granges bam written 4.7 years ago by pterry0 • updated 4.7 years ago by James W. MacDonald51k
1
vote
1
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759
views
1
answer
Gviz sashimi read count
gviz bam read counting sashimi plots sashimi written 2.6 years ago by bernt.popp0 • updated 2.6 years ago by Robert Ivanek640
0
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0
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756
views
0
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0
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2
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709
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2
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Graphing coverage() results
ggbio genomicalignments bam written 4.6 years ago by gen30
4
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1
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698
views
1
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Slice of aligned sequences
genomicalignments granges bam written 4.3 years ago by Thomas Poulsen10 • updated 4.3 years ago by Hervé Pagès ♦♦ 14k
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