Showing: bamreset
7
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4
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3.8k
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4
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how can I tell if a RNAseq BAM file is paired end or single end ?
ngs bam written 4.8 years ago by stephen6630 • updated 4.8 years ago by Sonali Arora380
4
votes
1
answer
697
views
1
answer
bamsignals - bamcoverage has no strand-specific option??
coverage bam bamsignals written 2.7 years ago by gtho12340 • updated 2.7 years ago by helmuth0
3
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1
answer
1.1k
views
1
answer
4
votes
2
answers
1.2k
views
2
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scanBam on BamSampler supposed to be fast?
rsamtools bam written 4.7 years ago by Johannes Rainer1.5k • updated 4.7 years ago by Martin Morgan ♦♦ 23k
5
votes
1
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2.9k
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1
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1
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1
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678
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1
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removing reads from coverage() calculation.
genomicranges rsamtools bam written 4.6 years ago by gen30 • updated 4.6 years ago by Martin Morgan ♦♦ 23k
4
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3
answers
1.3k
views
3
answers
4
votes
1
answer
698
views
1
answer
Slice of aligned sequences
genomicalignments granges bam written 4.3 years ago by Thomas Poulsen10 • updated 4.3 years ago by Hervé Pagès ♦♦ 14k
5
votes
2
answers
1.3k
views
2
answers
Reading alignments above a mapq threshold from BAM files
rsamtools bam written 4.3 years ago by Johannes Rainer1.5k • updated 4.3 years ago by Martin Morgan ♦♦ 23k
1
vote
1
answer
1.1k
views
1
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Rsamtools memory leak
iranges rsamtools granges bam scanbam written 4.0 years ago by mhills10
3
votes
1
answer
791
views
1
answer
Read in specific rows of a BAM file that match a certain RNAME
bam scanbamparam written 3.8 years ago by K50 • updated 3.8 years ago by Martin Morgan ♦♦ 23k
3
votes
2
answers
1.1k
views
2
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about VCF and BAM files
bam snv written 3.5 years ago by Bogdan580
2
votes
1
answer
598
views
1
answer
CAGEr BAM files size issue
biostrings cager software error R bam written 2.3 years ago by orzechowska.mag10 • updated 2.2 years ago by Charles Plessy110
7
votes
1
answer
189
views
1
answer
Convert BAM to FASTQ
bam fastq written 6 months ago by ioannis.vardaxis30 • updated 6 months ago by Martin Morgan ♦♦ 23k
1
vote
2
answers
1.3k
views
2
answers
Processing bam files by read group
rsamtools bam read group written 4.9 years ago by Thomas Sandmann70 • updated 4.8 years ago by Nathaniel Hayden180
6
votes
1
answer
1.3k
views
1
answer
1
vote
1
answer
765
views
1
answer
Conversion of BSgenome format to GRanges format?
bsgenome granges bam written 4.7 years ago by pterry0 • updated 4.7 years ago by James W. MacDonald51k
0
votes
2
answers
708
views
2
answers
Graphing coverage() results
ggbio genomicalignments bam written 4.6 years ago by gen30
0
votes
1
answer
887
views
1
answer
0
votes
0
answers
593
views
0
answers
0
votes
3
answers
3.2k
views
3
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SummarizeOverlaps in R
bam summarizeoverlaps rstudio written 4.3 years ago by Lillyhchen10 • updated 4.3 years ago by Jake60
2
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1
answer
671
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1
answer
1
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5
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884
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5
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0
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1
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918
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1
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0
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0
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1.1k
views
0
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