0
votes
1
answer
29
views
1
answer
0
votes
1
answer
35
views
1
answer
Model matrix not full rank
deseq2 batch effect model matrix not full rank written 5 days ago by sally.badawi0 • updated 4 days ago by Michael Love18k
6
votes
1
answer
137
views
1
answer
Batch Correction with only one sample in a batch
limma deseq2 batch effect written 5 weeks ago by i.sudbery10 • updated 5 weeks ago by Ryan C. Thompson6.8k
0
votes
0
answers
40
views
0
answers
1
vote
1
answer
144
views
1
answer
1
vote
1
answer
103
views
1
answer
2
votes
2
answers
115
views
2
answers
Compare groups of different RNAseq sets
limma batch effect written 8 weeks ago by b.nota290 • updated 8 weeks ago by Gordon Smyth33k
3
votes
1
answer
158
views
1
answer
1
vote
1
answer
175
views
1
answer
0
votes
1
answer
207
views
1
answer
Batch effect removal with Deseq2
limma deseq2 removebatcheffect() batch effect written 6 months ago by lirongrossmann10 • updated 6 months ago by Michael Love18k
0
votes
1
answer
187
views
1
answer
Single and double mutant DEG analysis using DESeq2
rnaseq deseq2 batch effect written 6 months ago by Cloud0 • updated 6 months ago by Michael Love18k
1
vote
1
answer
221
views
1
answer
Batch effect removal before SC3?
batch effect removebatcheffect sc3 written 6 months ago by muad.abdelhay10 • updated 6 months ago by Vladimir Kiselev130
0
votes
1
answer
212
views
1
answer
0
votes
1
answer
289
views
1
answer
0
votes
0
answers
158
views
0
answers
1
vote
1
answer
491
views
1
answer
deseq2 correcting for batch effects
deseq2 removebatcheffect() batch effect design matrix written 8 months ago by Assa Yeroslaviz1.4k • updated 8 months ago by Michael Love18k
0
votes
1
answer
161
views
1
answer
Discrepancy in extracting contrasts
deseq2 contrast batch effect resultsnames written 8 months ago by pkachroo10 • updated 8 months ago by Michael Love18k
0
votes
0
answers
212
views
0
answers
0
votes
0
answers
432
views
0
answers
1
vote
1
answer
654
views
1
answer
Scater normalizeExprs() batch effect
batch effect scater written 10 months ago by Jenn20 • updated 10 months ago by Aaron Lun19k
0
votes
2
answers
881
views
2
answers
2
votes
1
answer
178
views
1
answer
Plotting Gene Expression Data From Multiple Batches
microarray plot batch effect written 11 months ago by thyagoleal20 • updated 11 months ago by Jenny Drnevich1.9k
2
votes
1
answer
612
views
1
answer
2
votes
1
answer
263
views
1
answer
gene expression data analysis and batch effect methods
batch effect gene expression written 13 months ago by tati64060 • updated 12 months ago by chris86380
0
votes
0
answers
256
views
0
answers
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