3
votes
1
answer
70
views
1
answer
0
votes
1
answer
39
views
1
answer
0
votes
0
answers
39
views
0
answers
ComBat: missing peptide for one batch
combat batch effect missing value written 14 days ago by hjleeab0 • updated 14 days ago by Gordon Smyth35k
3
votes
2
answers
122
views
2
answers
8
votes
1
answer
73
views
1
answer
0
votes
1
answer
98
views
1
answer
RNA-seq unbalanced batch effect correction
rnaseq edger batch effect written 6 weeks ago by sckinta0 • updated 5 weeks ago by James W. MacDonald48k
0
votes
1
answer
76
views
1
answer
Batch effect correction for class detection
batch effect unsupervised written 7 weeks ago by kentfung0 • updated 7 weeks ago by James W. MacDonald48k
0
votes
1
answer
182
views
1
answer
0
votes
1
answer
91
views
1
answer
Problem with coefficients that are not estimable (limma)
limma batch effect written 3 months ago by rrm380 • updated 3 months ago by Aaron Lun21k
0
votes
0
answers
111
views
0
answers
Looking for Batch effects in PCA
batch effect pca written 3 months ago by K50
1
vote
1
answer
131
views
1
answer
2
votes
1
answer
126
views
1
answer
Batch Variation-MDS Plot
edger R batch effect written 3 months ago by drskm70 • updated 3 months ago by Gordon Smyth35k
0
votes
0
answers
59
views
0
answers
6
votes
1
answer
248
views
1
answer
0
votes
1
answer
73
views
1
answer
Model matrix not full rank
deseq2 batch effect model matrix not full rank written 3 months ago by sally.badawi0 • updated 3 months ago by Michael Love19k
6
votes
1
answer
234
views
1
answer
Batch Correction with only one sample in a batch
limma deseq2 batch effect written 5 months ago by i.sudbery10 • updated 5 months ago by Ryan C. Thompson6.9k
0
votes
0
answers
88
views
0
answers
1
vote
1
answer
212
views
1
answer
1
vote
1
answer
149
views
1
answer
2
votes
2
answers
157
views
2
answers
Compare groups of different RNAseq sets
limma batch effect written 5 months ago by b.nota300 • updated 5 months ago by Gordon Smyth35k
3
votes
1
answer
233
views
1
answer
1
vote
1
answer
216
views
1
answer
0
votes
1
answer
325
views
1
answer
Batch effect removal with Deseq2
limma deseq2 removebatcheffect() batch effect written 10 months ago by lirongrossmann10 • updated 10 months ago by Michael Love19k
0
votes
1
answer
229
views
1
answer
Single and double mutant DEG analysis using DESeq2
rnaseq deseq2 batch effect written 10 months ago by Cloud0 • updated 10 months ago by Michael Love19k
1
vote
1
answer
278
views
1
answer
Batch effect removal before SC3?
batch effect removebatcheffect sc3 written 10 months ago by muad.abdelhay10 • updated 10 months ago by Vladimir Kiselev130
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