0
votes
0
answers
41
views
0
answers
0
votes
1
answer
92
views
1
answer
model matrix for edgeR paired-design with batch effect
edger batch effect paired samples written 6 weeks ago by NGS-seeker0 • updated 6 weeks ago by Aaron Lun21k
2
votes
1
answer
176
views
1
answer
3
votes
1
answer
119
views
1
answer
0
votes
1
answer
83
views
1
answer
0
votes
0
answers
60
views
0
answers
ComBat: missing peptide for one batch
combat batch effect missing value written 9 weeks ago by hjleeab0 • updated 9 weeks ago by Gordon Smyth35k
3
votes
2
answers
241
views
2
answers
8
votes
1
answer
115
views
1
answer
0
votes
1
answer
141
views
1
answer
RNA-seq unbalanced batch effect correction
rnaseq edger batch effect written 3 months ago by sckinta0 • updated 3 months ago by James W. MacDonald48k
0
votes
1
answer
111
views
1
answer
Batch effect correction for class detection
batch effect unsupervised written 3 months ago by kentfung0 • updated 3 months ago by James W. MacDonald48k
0
votes
1
answer
252
views
1
answer
1
vote
1
answer
178
views
1
answer
Problem with coefficients that are not estimable (limma)
limma batch effect written 4 months ago by rrm380 • updated 4 months ago by Aaron Lun21k
0
votes
0
answers
173
views
0
answers
Looking for Batch effects in PCA
batch effect pca written 5 months ago by K50
1
vote
1
answer
178
views
1
answer
2
votes
1
answer
152
views
1
answer
Batch Variation-MDS Plot
edger R batch effect written 5 months ago by drskm70 • updated 5 months ago by Gordon Smyth35k
0
votes
0
answers
84
views
0
answers
6
votes
1
answer
346
views
1
answer
0
votes
1
answer
101
views
1
answer
Model matrix not full rank
deseq2 batch effect model matrix not full rank written 5 months ago by sally.badawi0 • updated 5 months ago by Michael Love20k
6
votes
1
answer
280
views
1
answer
Batch Correction with only one sample in a batch
limma deseq2 batch effect written 6 months ago by i.sudbery10 • updated 6 months ago by Ryan C. Thompson7.0k
0
votes
0
answers
118
views
0
answers
1
vote
1
answer
258
views
1
answer
1
vote
1
answer
167
views
1
answer
2
votes
2
answers
185
views
2
answers
Compare groups of different RNAseq sets
limma batch effect written 7 months ago by b.nota300 • updated 7 months ago by Gordon Smyth35k
3
votes
1
answer
267
views
1
answer
1
vote
1
answer
245
views
1
answer
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