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votes
1
answer
100
views
1
answer
0
votes
1
answer
45
views
1
answer
Problem with coefficients that are not estimable (limma)
limma batch effect written 27 days ago by rrm380 • updated 27 days ago by Aaron Lun20k
0
votes
0
answers
61
views
0
answers
Looking for Batch effects in PCA
batch effect pca written 4 weeks ago by K50
1
vote
1
answer
69
views
1
answer
2
votes
1
answer
82
views
1
answer
Batch Variation-MDS Plot
edger R batch effect written 7 weeks ago by drskm70 • updated 6 weeks ago by Gordon Smyth34k
0
votes
0
answers
29
views
0
answers
6
votes
1
answer
142
views
1
answer
0
votes
1
answer
45
views
1
answer
Model matrix not full rank
deseq2 batch effect model matrix not full rank written 8 weeks ago by sally.badawi0 • updated 8 weeks ago by Michael Love19k
6
votes
1
answer
192
views
1
answer
Batch Correction with only one sample in a batch
limma deseq2 batch effect written 12 weeks ago by i.sudbery10 • updated 12 weeks ago by Ryan C. Thompson6.8k
0
votes
0
answers
61
views
0
answers
1
vote
1
answer
170
views
1
answer
1
vote
1
answer
121
views
1
answer
2
votes
2
answers
134
views
2
answers
Compare groups of different RNAseq sets
limma batch effect written 3 months ago by b.nota300 • updated 3 months ago by Gordon Smyth34k
3
votes
1
answer
197
views
1
answer
1
vote
1
answer
186
views
1
answer
0
votes
1
answer
243
views
1
answer
Batch effect removal with Deseq2
limma deseq2 removebatcheffect() batch effect written 8 months ago by lirongrossmann10 • updated 7 months ago by Michael Love19k
0
votes
1
answer
197
views
1
answer
Single and double mutant DEG analysis using DESeq2
rnaseq deseq2 batch effect written 8 months ago by Cloud0 • updated 8 months ago by Michael Love19k
1
vote
1
answer
241
views
1
answer
Batch effect removal before SC3?
batch effect removebatcheffect sc3 written 8 months ago by muad.abdelhay10 • updated 8 months ago by Vladimir Kiselev130
0
votes
1
answer
250
views
1
answer
0
votes
1
answer
327
views
1
answer
0
votes
0
answers
166
views
0
answers
1
vote
1
answer
713
views
1
answer
deseq2 correcting for batch effects
deseq2 removebatcheffect() batch effect design matrix written 10 months ago by Assa Yeroslaviz1.4k • updated 10 months ago by Michael Love19k
0
votes
1
answer
184
views
1
answer
Discrepancy in extracting contrasts
deseq2 contrast batch effect resultsnames written 10 months ago by pkachroo10 • updated 10 months ago by Michael Love19k
0
votes
0
answers
224
views
0
answers
0
votes
0
answers
451
views
0
answers
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