bed Posts

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comparing 2 long BED files in R in an efficient way

vcf bed written 13 days ago by Bogdan • 490 • updated 13 days ago by GENOMIC_region • 0

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180

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GRanges object from gene list

genomeintervals genomicranges deseq2 granges bed written 5 months ago by rbronste • 60

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Can rtracklayer import tab-delimited BED files with unquoted spaces in fields?

rtracklayer software error bed written 10 months ago by Ryan C. Thompson ♦ 6.8k • updated 10 months ago by Michael Lawrence ♦ 10k

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553

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Plot per-base-coverage output of a bed file of whole genome

coverage bed written 11 months ago by sgupt46 • 0 • updated 11 months ago by James W. MacDonald ♦ 46k

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317

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AnnotationHub: two broad peaks from same url are not the same

annotationhub bugs bed encode written 19 months ago by wcstcyx • 30

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748

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Importing a BED file with floating point scores?

rtracklayer bed written 2.3 years ago by Ryan C. Thompson ♦ 6.8k • updated 2.3 years ago by Michael Lawrence ♦ 10k

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567

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rtracklayer::import()-ing .bed.gz files from a URL

rtracklayer bed import written 2.3 years ago by Peter Hickey • 370 • updated 2.3 years ago by Michael Lawrence ♦ 10k

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600

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UcscTrack and BED without headers

gviz ucsc bed ucsctrack written 2.5 years ago by Andy91 • 60

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512

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NAs values when importing BED file using import function

rtracklayer na bed getseq written 2.6 years ago by Dimitris Polychronopoulos • 50

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767

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Error reading vcf converted from bed file

bioc-devel readvcf plink file conversion bed written 3.3 years ago by mjsduncan • 0