bed Posts

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280

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rtracklayer cannot export empty BED file

rtracklayer genomicranges bed written 12 months ago by foehn • 60 • updated 12 months ago by Michael Lawrence ♦ 11k

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172

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Plotting bed8 with Sushi possible?

bed sushi written 14 months ago by maltethodberg • 140

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235

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comparing 2 long BED files in R in an efficient way

vcf bed written 17 months ago by Bogdan • 580 • updated 17 months ago by GENOMIC_region • 0

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434

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GRanges object from gene list

genomeintervals genomicranges deseq2 granges bed written 23 months ago by rbronste • 60

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531

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Can rtracklayer import tab-delimited BED files with unquoted spaces in fields?

rtracklayer software error bed written 2.2 years ago by Ryan C. Thompson ♦ 7.4k • updated 2.2 years ago by Michael Lawrence ♦ 11k

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796

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Plot per-base-coverage output of a bed file of whole genome

coverage bed written 2.3 years ago by sgupt46 • 0 • updated 2.3 years ago by James W. MacDonald ♦ 52k

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484

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AnnotationHub: two broad peaks from same url are not the same

annotationhub bugs bed encode written 3.0 years ago by wcstcyx • 30

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1.5k

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Importing a BED file with floating point scores?

rtracklayer bed written 3.7 years ago by Ryan C. Thompson ♦ 7.4k • updated 3.7 years ago by Michael Lawrence ♦ 11k

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950

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rtracklayer::import()-ing .bed.gz files from a URL

rtracklayer bed import written 3.7 years ago by Peter Hickey • 460 • updated 3.7 years ago by Michael Lawrence ♦ 11k

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839

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UcscTrack and BED without headers

gviz ucsc bed ucsctrack written 3.9 years ago by Andy91 • 60

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690

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NAs values when importing BED file using import function

rtracklayer na bed getseq written 4.1 years ago by Dimitris Polychronopoulos • 50

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1.0k

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Error reading vcf converted from bed file

bioc-devel readvcf plink file conversion bed written 4.7 years ago by mjsduncan • 0