8
votes
3
answers
1.5k
views
3
answers
Algorithm description for matchPWM (Biostrings)
biostrings matchpwm written 3.4 years ago by Yue Li370 • updated 3.4 years ago by Hervé Pagès ♦♦ 13k
4
votes
1
answer
721
views
1
answer
Chromosome position to nucleotide - Biostrings?
biostrings written 3.4 years ago by Brian Smith110 • updated 3.4 years ago by Julian Gehring1.3k
2
votes
1
answer
922
views
1
answer
getSeq with GRanges object error: function not found
bsgenome biostrings granges written 3.4 years ago by Miskey, Csaba20 • updated 3.4 years ago by Martin Morgan ♦♦ 21k
4
votes
1
answer
846
views
1
answer
2
votes
1
answer
509
views
1
answer
Comparing AAStrings using identical() instead of ==
biostrings identical aastring == written 3.3 years ago by jdavison10 • updated 3.2 years ago by Hervé Pagès ♦♦ 13k
3
votes
1
answer
683
views
1
answer
Reading large DNA alignments and keeping polymorphic sites
alignment biostrings sequence written 3.2 years ago by ben.ward30 • updated 3.2 years ago by Hervé Pagès ♦♦ 13k
5
votes
1
answer
1.8k
views
1
answer
2
votes
2
answers
373
views
2
answers
1
vote
1
answer
703
views
1
answer
4
votes
1
answer
756
views
1
answer
IRanges/ShortRead causing crash?
biostrings iranges shortread written 2.3 years ago by pavitrarc20 • updated 2.3 years ago by Martin Morgan ♦♦ 21k
4
votes
1
answer
351
views
1
answer
IRanges, Partitioning by End function not found.
biostrings iranges written 2.1 years ago by ben.ward30 • updated 2.1 years ago by Martin Morgan ♦♦ 21k
3
votes
1
answer
314
views
1
answer
how to catch an error when using subseq() in vectorized way
biostrings subseq written 12 months ago by tobias.kockmann20 • updated 12 months ago by Martin Morgan ♦♦ 21k
2
votes
1
answer
254
views
1
answer
CAGEr BAM files size issue
biostrings cager software error R bam written 7 months ago by orzechowska.mag10 • updated 6 months ago by Charles Plessy30
2
votes
1
answer
141
views
1
answer
msa: How to obtain a subset of an alignment
biostrings msa multiplealignment written 5 months ago by Christof Winter10 • updated 5 months ago by UBodenhofer250
2
votes
1
answer
80
views
1
answer
How can I remove the ellipsis and get the complete sequence and results?
biostrings keggrest written 4 weeks ago by xieduo10 • updated 4 weeks ago by shepherl ♦♦ 530
0
votes
0
answers
436
views
0
answers
0
votes
0
answers
365
views
0
answers
0
votes
1
answer
377
views
1
answer
is Biostrings being maintained?
biostrings written 12.3 years ago by Marcus G. Daniels30 • updated 12.3 years ago by rgentleman5.5k
0
votes
3
answers
368
views
3
answers
advice on Biostrings
biostrings written 12.0 years ago by Rafael A. Irizarry2.3k • updated 12.0 years ago by Martin Morgan ♦♦ 21k
0
votes
2
answers
209
views
2
answers
[biocpkgs] suggestions on package matchprobes
cancer biostrings written 11.5 years ago by rgentleman5.5k • updated 11.4 years ago by Xinxia Peng120
0
votes
4
answers
443
views
4
answers
DNAString ("GC") -- error in nchar?
biostrings written 10.4 years ago by Paul Shannon1.1k • updated 10.4 years ago by Martin Morgan ♦♦ 21k
0
votes
0
answers
254
views
0
answers
0
votes
1
answer
488
views
1
answer
Installing BioC + R 2.6: warnings
biostrings written 10.4 years ago by Paolo Innocenti320 • updated 10.4 years ago by Hervé Pagès ♦♦ 13k
0
votes
2
answers
670
views
2
answers
sequence search using a position weight matrix?
biostrings cosmo written 10.4 years ago by Paul Shannon1.1k • updated 10.4 years ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
316
views
1
answer
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