8
votes
3
answers
1.6k
views
3
answers
Algorithm description for matchPWM (Biostrings)
biostrings matchpwm written 3.8 years ago by Yue Li370 • updated 3.8 years ago by Hervé Pagès ♦♦ 13k
4
votes
1
answer
823
views
1
answer
Chromosome position to nucleotide - Biostrings?
biostrings written 3.7 years ago by Brian Smith120 • updated 3.7 years ago by Julian Gehring1.3k
2
votes
1
answer
998
views
1
answer
getSeq with GRanges object error: function not found
bsgenome biostrings granges written 3.8 years ago by Miskey, Csaba20 • updated 3.8 years ago by Martin Morgan ♦♦ 21k
4
votes
1
answer
952
views
1
answer
2
votes
1
answer
553
views
1
answer
Comparing AAStrings using identical() instead of ==
biostrings identical aastring == written 3.6 years ago by jdavison10 • updated 3.5 years ago by Hervé Pagès ♦♦ 13k
3
votes
1
answer
704
views
1
answer
Reading large DNA alignments and keeping polymorphic sites
alignment biostrings sequence written 3.5 years ago by ben.ward30 • updated 3.5 years ago by Hervé Pagès ♦♦ 13k
5
votes
1
answer
2.1k
views
1
answer
2
votes
2
answers
446
views
2
answers
1
vote
1
answer
852
views
1
answer
4
votes
1
answer
829
views
1
answer
IRanges/ShortRead causing crash?
biostrings iranges shortread written 2.6 years ago by pavitrarc20 • updated 2.6 years ago by Martin Morgan ♦♦ 21k
4
votes
1
answer
391
views
1
answer
IRanges, Partitioning by End function not found.
biostrings iranges written 2.4 years ago by ben.ward30 • updated 2.4 years ago by Martin Morgan ♦♦ 21k
3
votes
1
answer
373
views
1
answer
how to catch an error when using subseq() in vectorized way
biostrings subseq written 16 months ago by tobias.kockmann20 • updated 16 months ago by Martin Morgan ♦♦ 21k
2
votes
1
answer
332
views
1
answer
CAGEr BAM files size issue
biostrings cager software error R bam written 11 months ago by orzechowska.mag10 • updated 10 months ago by Charles Plessy30
2
votes
1
answer
197
views
1
answer
msa: How to obtain a subset of an alignment
biostrings msa multiplealignment written 9 months ago by Christof Winter10 • updated 9 months ago by UBodenhofer250
2
votes
1
answer
129
views
1
answer
How can I remove the ellipsis and get the complete sequence and results?
biostrings keggrest written 5 months ago by xieduo10 • updated 5 months ago by shepherl ♦♦ 620
2
votes
1
answer
28
views
1
answer
Biostrings: "Error in .normargSEW(start, "start")"
biostrings written 2 days ago by Brian Smith120 • updated 2 days ago by Martin Morgan ♦♦ 21k
0
votes
0
answers
491
views
0
answers
0
votes
0
answers
423
views
0
answers
0
votes
1
answer
423
views
1
answer
is Biostrings being maintained?
biostrings written 12.7 years ago by Marcus G. Daniels30 • updated 12.7 years ago by rgentleman5.5k
0
votes
3
answers
426
views
3
answers
advice on Biostrings
biostrings written 12.3 years ago by Rafael A. Irizarry2.3k • updated 12.3 years ago by Martin Morgan ♦♦ 21k
0
votes
2
answers
241
views
2
answers
[biocpkgs] suggestions on package matchprobes
cancer biostrings written 11.8 years ago by rgentleman5.5k • updated 11.8 years ago by Xinxia Peng120
0
votes
4
answers
481
views
4
answers
DNAString ("GC") -- error in nchar?
biostrings written 10.7 years ago by Paul Shannon1.1k • updated 10.7 years ago by Martin Morgan ♦♦ 21k
0
votes
0
answers
296
views
0
answers
0
votes
1
answer
549
views
1
answer
Installing BioC + R 2.6: warnings
biostrings written 10.7 years ago by Paolo Innocenti320 • updated 10.7 years ago by Hervé Pagès ♦♦ 13k
0
votes
2
answers
752
views
2
answers
sequence search using a position weight matrix?
biostrings cosmo written 10.7 years ago by Paul Shannon1.1k • updated 10.7 years ago by Hervé Pagès ♦♦ 13k
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