8
votes
3
answers
1.7k
views
3
answers
Algorithm description for matchPWM (Biostrings)
biostrings matchpwm written 4.0 years ago by Yue Li370 • updated 4.0 years ago by Hervé Pagès ♦♦ 13k
4
votes
1
answer
910
views
1
answer
Chromosome position to nucleotide - Biostrings?
biostrings written 3.9 years ago by Brian Smith120 • updated 3.9 years ago by Julian Gehring1.3k
2
votes
1
answer
1.1k
views
1
answer
getSeq with GRanges object error: function not found
bsgenome biostrings granges written 4.0 years ago by Miskey, Csaba20 • updated 4.0 years ago by Martin Morgan ♦♦ 22k
4
votes
1
answer
1.0k
views
1
answer
2
votes
1
answer
581
views
1
answer
Comparing AAStrings using identical() instead of ==
biostrings identical aastring == written 3.8 years ago by jdavison10 • updated 3.8 years ago by Hervé Pagès ♦♦ 13k
3
votes
1
answer
729
views
1
answer
Reading large DNA alignments and keeping polymorphic sites
alignment biostrings sequence written 3.8 years ago by ben.ward30 • updated 3.8 years ago by Hervé Pagès ♦♦ 13k
5
votes
1
answer
2.2k
views
1
answer
2
votes
2
answers
472
views
2
answers
1
vote
1
answer
933
views
1
answer
4
votes
1
answer
876
views
1
answer
IRanges/ShortRead causing crash?
biostrings iranges shortread written 2.8 years ago by pavitrarc20 • updated 2.8 years ago by Martin Morgan ♦♦ 22k
4
votes
1
answer
414
views
1
answer
IRanges, Partitioning by End function not found.
biostrings iranges written 2.7 years ago by ben.ward30 • updated 2.7 years ago by Martin Morgan ♦♦ 22k
4
votes
1
answer
419
views
1
answer
how to catch an error when using subseq() in vectorized way
biostrings subseq written 19 months ago by tobias.kockmann20 • updated 19 months ago by Martin Morgan ♦♦ 22k
2
votes
1
answer
375
views
1
answer
CAGEr BAM files size issue
biostrings cager software error R bam written 14 months ago by orzechowska.mag10 • updated 13 months ago by Charles Plessy30
2
votes
1
answer
255
views
1
answer
msa: How to obtain a subset of an alignment
biostrings msa multiplealignment written 12 months ago by Christof Winter10 • updated 12 months ago by UBodenhofer250
2
votes
1
answer
162
views
1
answer
How can I remove the ellipsis and get the complete sequence and results?
biostrings keggrest written 8 months ago by xieduo10 • updated 8 months ago by shepherl ♦♦ 730
2
votes
1
answer
79
views
1
answer
Biostrings: "Error in .normargSEW(start, "start")"
biostrings written 3 months ago by Brian Smith120 • updated 3 months ago by Martin Morgan ♦♦ 22k
0
votes
0
answers
516
views
0
answers
0
votes
0
answers
459
views
0
answers
0
votes
1
answer
446
views
1
answer
is Biostrings being maintained?
biostrings written 12.9 years ago by Marcus G. Daniels30 • updated 12.9 years ago by rgentleman5.5k
0
votes
3
answers
484
views
3
answers
advice on Biostrings
biostrings written 12.6 years ago by Rafael A. Irizarry2.3k • updated 12.6 years ago by Martin Morgan ♦♦ 22k
0
votes
2
answers
265
views
2
answers
[biocpkgs] suggestions on package matchprobes
cancer biostrings written 12.0 years ago by rgentleman5.5k • updated 12.0 years ago by Xinxia Peng120
0
votes
4
answers
509
views
4
answers
DNAString ("GC") -- error in nchar?
biostrings written 11.0 years ago by Paul Shannon1.1k • updated 11.0 years ago by Martin Morgan ♦♦ 22k
0
votes
0
answers
314
views
0
answers
0
votes
1
answer
578
views
1
answer
Installing BioC + R 2.6: warnings
biostrings written 11.0 years ago by Paolo Innocenti320 • updated 11.0 years ago by Hervé Pagès ♦♦ 13k
0
votes
2
answers
811
views
2
answers
sequence search using a position weight matrix?
biostrings cosmo written 11.0 years ago by Paul Shannon1.1k • updated 11.0 years ago by Hervé Pagès ♦♦ 13k
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