blast Posts

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blastn for selected database and/or organism

blast blastsequences written 19 months ago by aush • 40 • updated 19 months ago by James W. MacDonald ♦ 52k

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285

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batch blast matrix of protein sequences from R

R blast protein blastsequences written 22 months ago by andres.susrud • 0

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blastSequences queries failing due to BLAST switch to https?

annotate blast blastsequences https written 3.2 years ago by ariel.hecht • 0 • updated 3.2 years ago by Martin Morgan ♦♦ 24k

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Which package to run blast

blast written 3.3 years ago by biomiha • 20 • updated 3.3 years ago by Malcolm Cook • 1.5k

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440

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After mapping one Sanger sequence read (about 900bp) to hg19 using blastn, How can I get variants presented as reference-based position and base change with the blastn output file?

variantannotation biostrings blast written 3.3 years ago by li lilingdu • 450

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Primer-blast with bioconductor packages

blast primer written 3.6 years ago by Vinicius Henrique da Silva • 40 • updated 3.6 years ago by Hervé Pagès ♦♦ 14k

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Blastp - through R

R blast written 3.9 years ago by maahpishanu • 0

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How to create an output file with sequence ID's from multiple BLAST result using blastSequences in "Biostrings"

annotation biostrings blast written 4.4 years ago by Mathilde • 0 • updated 4.4 years ago by Martin Morgan ♦♦ 24k

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BLAST export library 'annotate'

annotate biostrings blast export fasta written 5.1 years ago by b.stielow • 0

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Use R/Bioconductor to match BLAST hits to GO terms?

annotation go blast written 5.2 years ago by Jon Bråte • 160 • updated 5.2 years ago by Marc Carlson • 7.2k