chipseeker Posts

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116

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Using EnsDb.Hsapiens.v86 database doesn't fetch the ENSEMBL IDs

chipseeker written 11 weeks ago by sutturka • 0

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271

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Unable to annotate the differential peaks from DiffBind using ChIPseeker

diffbind chipseeker chip seq peak annotation annotatepeak() written 3 months ago by researcher • 0

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287

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error in readPeakFile {chipseeker}

chipseeker readpeakfile written 7 months ago by theodore.georgomanolis • 0

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273

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Problem in using covplot ChIPseeker

chipseeker software error written 9 months ago by vasudha.sharma • 0

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303

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ChIPseeker genomicAnnotationPriority

annotation chipseeker written 11 months ago by dolata • 0

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295

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How to use ChIPseeker for getting genebody annotations.

chipseq chipseeker written 11 months ago by shikhtechai • 0

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371

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how to get frequencies from plotDistToTSS

chipseeker written 12 months ago by KKO • 0

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302

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ChipSeeker Flanking gene annotation

chipseeker written 14 months ago by Lauma R • 0

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258

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covplot and getChrCov function

chipseeker written 14 months ago by xiaofeiwang198266 • 0

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257

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How to get the genome distribution in proportion of promoter, 1st exon, other exon, 1st intron, other intron, distal intergenic, etc from a species

chipseeker written 15 months ago by bright602 • 0

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446

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ChIP peak annotation: how to get all genes that overlap each peak?

chippeakanno chipseeker chip-seq written 16 months ago by 94133 • 0

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658

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Error: package or namespace load failed for 'ChIPseeker' in dyn.load(file, DLLpath = DLLpath

chipseeker written 17 months ago by liucz200904 • 0

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282

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How does vennplot() within Chipseeker define overlaps?

chipseeker vennplot written 18 months ago by kevin.potter12 • 0

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446

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problem on getpromoters on hg38

chipseeker written 21 months ago by jarod_v6@libero.it • 40

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625

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Intergenic assigned to genes by ChIPseeker

chipseeker txdb.mmusculus.ucsc.mm10.knowngene written 24 months ago by doan.dinh • 0

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400

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Removing/combining specific annotation categories in ChIPSeeker plots/analysis

chipseq annotation chipseeker written 2.1 years ago by rbronste • 60

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479

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Assigning stats to differential peak locations relative to TSS

chipseq chipseeker statistics written 2.2 years ago by rbronste • 60

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599

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What is the confidence interval in ChIPseeker::plotAvgProf?

chipseeker written 2.7 years ago by enricoferrero • 570

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789

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ChIPseeker, read multiple peak files

chipseeker written 3.2 years ago by tintinfinfin123 • 0 • updated 3.1 years ago by James W. MacDonald ♦ 52k

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762

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getTagMatrixList question from ChIPSeeker package

chipseeker written 4.0 years ago by Ana.SastrePerona • 0

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884

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error running Chipseeker

annotation chipseeker written 5.2 years ago by bdk • 0 • updated 5.2 years ago by Martin Morgan ♦♦ 24k