chipseeker Posts

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Unable to annotate the differential peaks from DiffBind using ChIPseeker

diffbind chipseeker chip seq peak annotation annotatepeak() written 7 days ago by researcher • 0

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190

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error in readPeakFile {chipseeker}

chipseeker readpeakfile written 4 months ago by theodore.georgomanolis • 0

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221

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Problem in using covplot ChIPseeker

chipseeker software error written 6 months ago by vasudha.sharma • 0

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241

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ChIPseeker genomicAnnotationPriority

annotation chipseeker written 8 months ago by dolata • 0

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259

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How to use ChIPseeker for getting genebody annotations.

chipseq chipseeker written 9 months ago by shikhtechai • 0

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321

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how to get frequencies from plotDistToTSS

chipseeker written 9 months ago by KKO • 0

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276

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ChipSeeker Flanking gene annotation

chipseeker written 11 months ago by Lauma R • 0

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229

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covplot and getChrCov function

chipseeker written 11 months ago by xiaofeiwang198266 • 0

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227

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How to get the genome distribution in proportion of promoter, 1st exon, other exon, 1st intron, other intron, distal intergenic, etc from a species

chipseeker written 13 months ago by bright602 • 0

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405

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ChIP peak annotation: how to get all genes that overlap each peak?

chippeakanno chipseeker chip-seq written 14 months ago by 94133 • 0

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507

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Error: package or namespace load failed for 'ChIPseeker' in dyn.load(file, DLLpath = DLLpath

chipseeker written 14 months ago by liucz200904 • 0

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255

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How does vennplot() within Chipseeker define overlaps?

chipseeker vennplot written 15 months ago by kevin.potter12 • 0

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406

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problem on getpromoters on hg38

chipseeker written 19 months ago by jarod_v6@libero.it • 40

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573

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Intergenic assigned to genes by ChIPseeker

chipseeker txdb.mmusculus.ucsc.mm10.knowngene written 21 months ago by doan.dinh • 0

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384

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Removing/combining specific annotation categories in ChIPSeeker plots/analysis

chipseq annotation chipseeker written 22 months ago by rbronste • 60

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450

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Assigning stats to differential peak locations relative to TSS

chipseq chipseeker statistics written 24 months ago by rbronste • 60

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567

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What is the confidence interval in ChIPseeker::plotAvgProf?

chipseeker written 2.4 years ago by enricoferrero • 570

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747

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ChIPseeker, read multiple peak files

chipseeker written 3.0 years ago by tintinfinfin123 • 0 • updated 2.9 years ago by James W. MacDonald ♦ 51k

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726

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getTagMatrixList question from ChIPSeeker package

chipseeker written 3.8 years ago by Ana.SastrePerona • 0

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852

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error running Chipseeker

annotation chipseeker written 5.0 years ago by bdk • 0 • updated 5.0 years ago by Martin Morgan ♦♦ 23k