2
votes
2
answers
359
views
2
answers
2
votes
1
answer
271
views
1
answer
complex design for chip-seq analysis
chipseq limma multiple factor design design matrix csaw written 11 months ago by Assa Yeroslaviz1.4k • updated 11 months ago by Aaron Lun21k
0
votes
1
answer
221
views
1
answer
Pseudo-coloring DiffBind volcano plot
chipseq diffbind volcanoplot ggplot2 written 11 months ago by rbronste60 • updated 11 months ago by Rory Stark2.5k
1
vote
1
answer
264
views
1
answer
DiffBind error: diffbind DESeq2 analysis has not been run for this contrast
chipseq diffbind R written 11 months ago by kyliecode0 • updated 11 months ago by Rory Stark2.5k
0
votes
0
answers
305
views
0
answers
2
votes
1
answer
282
views
1
answer
ChIPseeker mapping between keys and columns
chipseq chipseeker written 12 months ago by rbronste60 • updated 12 months ago by Gavin Kelly560
1
vote
1
answer
499
views
1
answer
DiffBind broad and narrow peak identification
chipseq diffbind R written 12 months ago by reubenmcgregor880 • updated 12 months ago by Rory Stark2.5k
2
votes
2
answers
530
views
2
answers
MA plot DiffBind in ggplot2
chipseq diffbind R ggplot2 written 12 months ago by reubenmcgregor880 • updated 12 months ago by Rory Stark2.5k
1
vote
1
answer
293
views
1
answer
Diffbind Consensus vs Differential peak sets from same count
chipseq diffbind written 12 months ago by rbronste60 • updated 12 months ago by Rory Stark2.5k
0
votes
0
answers
238
views
0
answers
2
votes
1
answer
501
views
1
answer
DiffBind consensus peak help
chipseq diffbind R written 12 months ago by reubenmcgregor880 • updated 12 months ago by Rory Stark2.5k
1
vote
1
answer
434
views
1
answer
DiffBind masks for counts
chipseq diffbind written 13 months ago by rbronste60 • updated 12 months ago by Rory Stark2.5k
2
votes
1
answer
485
views
1
answer
DiffBind contrasts issue
chipseq diffbind written 13 months ago by rbronste60 • updated 12 months ago by Rory Stark2.5k
5
votes
1
answer
445
views
1
answer
18
votes
4
answers
6.8k
views
4
answers
DESeq2 for ChIP-seq differential peaks
chipseq deseq deseq2 written 3.0 years ago by tangming200590 • updated 14 months ago by k.vitting.seerup20
0
votes
1
answer
189
views
1
answer
How to set the amount of RAM used for Package 'BCRANK' ?
chipseq bcrank written 15 months ago by rezapanahi2220 • updated 15 months ago by James W. MacDonald47k
0
votes
0
answers
248
views
0
answers
2
votes
3
answers
371
views
3
answers
1
vote
2
answers
659
views
2
answers
loading dba.plotVolcano in DiffBind
chipseq diffbind atac-seq rory stark written 17 months ago by andrew.gehrke0 • updated 17 months ago by Rory Stark2.5k
1
vote
2
answers
852
views
2
answers
3
votes
1
answer
552
views
1
answer
Differential Pol2 pausing analysis
chipseq edger csaw differential binding analysis written 19 months ago by dalerr0 • updated 19 months ago by Aaron Lun21k
3
votes
1
answer
438
views
1
answer
Use csaw to build matrix for heatmap?
chipseq edger csaw written 19 months ago by jmKeith0 • updated 19 months ago by Aaron Lun21k
0
votes
1
answer
438
views
1
answer
0
votes
0
answers
360
views
0
answers
1
vote
1
answer
306
views
1
answer
Providing specific regions to Diffbind
chipseq diffbind written 23 months ago by sergio.espeso-gil0 • updated 22 months ago by Rory Stark2.5k
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