1
vote
1
answer
398
views
1
answer
DiffBind broad and narrow peak identification
chipseq diffbind R written 9 months ago by reubenmcgregor880 • updated 9 months ago by Rory Stark2.5k
2
votes
2
answers
403
views
2
answers
MA plot DiffBind in ggplot2
chipseq diffbind R ggplot2 written 9 months ago by reubenmcgregor880 • updated 9 months ago by Rory Stark2.5k
1
vote
1
answer
250
views
1
answer
Diffbind Consensus vs Differential peak sets from same count
chipseq diffbind written 9 months ago by rbronste60 • updated 9 months ago by Rory Stark2.5k
0
votes
0
answers
191
views
0
answers
2
votes
1
answer
412
views
1
answer
DiffBind consensus peak help
chipseq diffbind R written 9 months ago by reubenmcgregor880 • updated 9 months ago by Rory Stark2.5k
1
vote
1
answer
413
views
1
answer
DiffBind masks for counts
chipseq diffbind written 9 months ago by rbronste60 • updated 9 months ago by Rory Stark2.5k
2
votes
1
answer
454
views
1
answer
DiffBind contrasts issue
chipseq diffbind written 10 months ago by rbronste60 • updated 9 months ago by Rory Stark2.5k
5
votes
1
answer
372
views
1
answer
18
votes
4
answers
6.2k
views
4
answers
DESeq2 for ChIP-seq differential peaks
chipseq deseq deseq2 written 2.8 years ago by tangming200590 • updated 11 months ago by k.vitting.seerup20
0
votes
1
answer
159
views
1
answer
How to set the amount of RAM used for Package 'BCRANK' ?
chipseq bcrank written 11 months ago by rezapanahi2220 • updated 11 months ago by James W. MacDonald46k
0
votes
0
answers
215
views
0
answers
2
votes
3
answers
314
views
3
answers
1
vote
2
answers
563
views
2
answers
loading dba.plotVolcano in DiffBind
chipseq diffbind atac-seq rory stark written 14 months ago by andrew.gehrke0 • updated 14 months ago by Rory Stark2.5k
1
vote
2
answers
720
views
2
answers
3
votes
1
answer
493
views
1
answer
Differential Pol2 pausing analysis
chipseq edger csaw differential binding analysis written 16 months ago by dalerr0 • updated 16 months ago by Aaron Lun19k
3
votes
1
answer
394
views
1
answer
Use csaw to build matrix for heatmap?
chipseq edger csaw written 16 months ago by jmKeith0 • updated 16 months ago by Aaron Lun19k
0
votes
1
answer
385
views
1
answer
0
votes
0
answers
329
views
0
answers
1
vote
1
answer
293
views
1
answer
Providing specific regions to Diffbind
chipseq diffbind written 19 months ago by sergio.espeso-gil0 • updated 19 months ago by Rory Stark2.5k
1
vote
1
answer
353
views
1
answer
DiffBind Error when dba.count on a pre-defined peak set
chipseq diffbind written 20 months ago by tangming200590 • updated 20 months ago by Rory Stark2.5k
0
votes
1
answer
306
views
1
answer
1
vote
1
answer
459
views
1
answer
question regarding custom normalizationFactors in DESeq2
chipseq normalization deseq2 R written 21 months ago by walter.eckalbar0 • updated 21 months ago by Simon Anders3.5k
3
votes
2
answers
748
views
2
answers
DiffBind "no lines available in input" error
chipseq diffbind written 23 months ago by igor20 • updated 23 months ago by Rory Stark2.5k
0
votes
1
answer
455
views
1
answer
DiffBind TMM normalization
chipseq edger diffbind tmm rory stark written 2.1 years ago by akdess0 • updated 23 months ago by Rory Stark2.5k
0
votes
1
answer
369
views
1
answer
DiffBind: Consensus peak score ?
chipseq diffbind peak written 24 months ago by becavin.christophe0 • updated 24 months ago by Rory Stark2.5k
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