18
votes
4
answers
5.4k
views
4
answers
DESeq2 for ChIP-seq differential peaks
chipseq deseq deseq2 written 2.5 years ago by tangming200590 • updated 7 months ago by k.vitting.seerup20
0
votes
1
answer
129
views
1
answer
How to set the amount of RAM used for Package 'BCRANK' ?
chipseq bcrank written 8 months ago by rezapanahi2220 • updated 8 months ago by James W. MacDonald45k
0
votes
0
answers
175
views
0
answers
2
votes
3
answers
252
views
3
answers
1
vote
2
answers
454
views
2
answers
loading dba.plotVolcano in DiffBind
chipseq diffbind atac-seq rory stark written 10 months ago by andrew.gehrke0 • updated 10 months ago by Rory Stark2.3k
1
vote
2
answers
561
views
2
answers
3
votes
1
answer
408
views
1
answer
Differential Pol2 pausing analysis
chipseq edger csaw differential binding analysis written 12 months ago by dalerr0 • updated 12 months ago by Aaron Lun18k
3
votes
1
answer
343
views
1
answer
Use csaw to build matrix for heatmap?
chipseq edger csaw written 12 months ago by jmKeith0 • updated 12 months ago by Aaron Lun18k
0
votes
1
answer
315
views
1
answer
0
votes
0
answers
284
views
0
answers
1
vote
1
answer
267
views
1
answer
Providing specific regions to Diffbind
chipseq diffbind written 15 months ago by sergio.espeso-gil0 • updated 15 months ago by Rory Stark2.3k
1
vote
1
answer
307
views
1
answer
DiffBind Error when dba.count on a pre-defined peak set
chipseq diffbind written 16 months ago by tangming200590 • updated 16 months ago by Rory Stark2.3k
0
votes
1
answer
272
views
1
answer
1
vote
1
answer
384
views
1
answer
question regarding custom normalizationFactors in DESeq2
chipseq normalization deseq2 R written 17 months ago by walter.eckalbar0 • updated 17 months ago by Simon Anders3.4k
3
votes
2
answers
613
views
2
answers
DiffBind "no lines available in input" error
chipseq diffbind written 19 months ago by igor20 • updated 19 months ago by Rory Stark2.3k
0
votes
1
answer
398
views
1
answer
DiffBind TMM normalization
chipseq edger diffbind tmm rory stark written 21 months ago by akdess0 • updated 19 months ago by Rory Stark2.3k
0
votes
1
answer
335
views
1
answer
DiffBind: Consensus peak score ?
chipseq diffbind peak written 20 months ago by becavin.christophe0 • updated 20 months ago by Rory Stark2.3k
1
vote
0
answers
1.1k
views
0
answers
2
votes
1
answer
371
views
1
answer
0
votes
0
answers
270
views
0
answers
4
votes
1
answer
743
views
1
answer
0
votes
1
answer
562
views
1
answer
1
vote
1
answer
520
views
1
answer
0
votes
0
answers
379
views
0
answers
0
votes
1
answer
965
views
1
answer
Generating unexpected peaks from DiffBind
chipseq diffbind written 2.2 years ago by michael.alexander.finger0 • updated 2.2 years ago by Rory Stark2.3k
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