8
votes
3
answers
3.3k
views
5 follow
3
answers
ChIPseq-style peak calling for paired-end sequencing?
dnaseq chipseq bayespeak narrowpeaks atac written 3.4 years ago by samuel collombet120 • updated 3.4 years ago by Gordon Smyth35k
0
votes
1
answer
546
views
1
answer
DESeq on CCAT identified chipseq peaks
chipseq deseq written 4.4 years ago by Guest User12k • updated 4.4 years ago by Rory Stark2.5k
3
votes
4
answers
863
views
4
answers
0
votes
3
answers
636
views
3
answers
2
votes
1
answer
156
views
1
answer
5
votes
2
answers
936
views
2
answers
Score column for DiffBind::dba.peakset
chipseq diffbind written 3.5 years ago by teckpor0 • updated 3.5 years ago by Gord Brown570
2
votes
5
answers
979
views
5
answers
7
votes
3
answers
2.0k
views
3
answers
0
votes
1
answer
618
views
1
answer
Error in ChIPQC
chipseq chipq written 3.0 years ago by lindahove10 • updated 3.0 years ago by Valerie Obenchain ♦♦ 6.6k
1
vote
1
answer
1.2k
views
1
answer
Generating unexpected peaks from DiffBind
chipseq diffbind written 2.8 years ago by michael.alexander.finger0 • updated 2.8 years ago by Rory Stark2.5k
4
votes
1
answer
1.0k
views
1
answer
2
votes
1
answer
504
views
1
answer
1
vote
1
answer
500
views
1
answer
question regarding custom normalizationFactors in DESeq2
chipseq normalization deseq2 R written 2.1 years ago by walter.eckalbar0 • updated 2.1 years ago by Simon Anders3.5k
0
votes
1
answer
442
views
1
answer
2
votes
1
answer
525
views
1
answer
DiffBind consensus peak help
chipseq diffbind R written 13 months ago by reubenmcgregor880 • updated 13 months ago by Rory Stark2.5k
2
votes
1
answer
297
views
1
answer
ChIPseeker mapping between keys and columns
chipseq chipseeker written 12 months ago by rbronste60 • updated 12 months ago by Gavin Kelly560
1
vote
1
answer
282
views
1
answer
DiffBind error: diffbind DESeq2 analysis has not been run for this contrast
chipseq diffbind R written 12 months ago by kyliecode0 • updated 12 months ago by Rory Stark2.5k
2
votes
1
answer
282
views
1
answer
complex design for chip-seq analysis
chipseq limma multiple factor design design matrix csaw written 11 months ago by Assa Yeroslaviz1.4k • updated 11 months ago by Aaron Lun21k
2
votes
2
answers
376
views
2
answers
3
votes
2
answers
389
views
2
answers
dba.count with pre-defined regions
chipseq diffbind dba.count dba written 10 months ago by sylvia10 • updated 10 months ago by Rory Stark2.5k
0
votes
1
answer
422
views
1
answer
How to install chipseq package
chipseq written 9.6 years ago by Yuan Hao80 • updated 9.6 years ago by Patrick Aboyoun1.6k
0
votes
1
answer
341
views
1
answer
0
votes
0
answers
393
views
0
answers
ChIPpeakAnnot -names field requried
chipseq written 8.8 years ago by Julie Zhu3.8k
0
votes
2
answers
583
views
2
answers
chip-seq data analysis
transcription chipseq alignment written 8.6 years ago by Tiandao Li60 • updated 8.6 years ago by Sean Davis21k
0
votes
0
answers
395
views
0
answers
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