8
votes
3
answers
3.1k
views
5 follow
3
answers
ChIPseq-style peak calling for paired-end sequencing?
dnaseq chipseq bayespeak narrowpeaks atac written 3.2 years ago by samuel collombet120 • updated 3.1 years ago by Gordon Smyth34k
0
votes
1
answer
514
views
1
answer
DESeq on CCAT identified chipseq peaks
chipseq deseq written 4.2 years ago by Guest User12k • updated 4.2 years ago by Rory Stark2.5k
3
votes
4
answers
823
views
4
answers
0
votes
3
answers
614
views
3
answers
2
votes
1
answer
104
views
1
answer
5
votes
2
answers
868
views
2
answers
Score column for DiffBind::dba.peakset
chipseq diffbind written 3.3 years ago by teckpor0 • updated 3.3 years ago by Gord Brown570
2
votes
5
answers
939
views
5
answers
7
votes
3
answers
1.9k
views
3
answers
0
votes
1
answer
561
views
1
answer
Error in ChIPQC
chipseq chipq written 2.8 years ago by lindahove10 • updated 2.8 years ago by Valerie Obenchain ♦♦ 6.5k
1
vote
1
answer
1.1k
views
1
answer
Generating unexpected peaks from DiffBind
chipseq diffbind written 2.6 years ago by michael.alexander.finger0 • updated 2.5 years ago by Rory Stark2.5k
4
votes
1
answer
920
views
1
answer
2
votes
1
answer
466
views
1
answer
1
vote
1
answer
471
views
1
answer
question regarding custom normalizationFactors in DESeq2
chipseq normalization deseq2 R written 22 months ago by walter.eckalbar0 • updated 22 months ago by Simon Anders3.5k
0
votes
1
answer
403
views
1
answer
2
votes
1
answer
426
views
1
answer
DiffBind consensus peak help
chipseq diffbind R written 10 months ago by reubenmcgregor880 • updated 10 months ago by Rory Stark2.5k
2
votes
1
answer
252
views
1
answer
ChIPseeker mapping between keys and columns
chipseq chipseeker written 9 months ago by rbronste60 • updated 9 months ago by Gavin Kelly550
1
vote
1
answer
220
views
1
answer
DiffBind error: diffbind DESeq2 analysis has not been run for this contrast
chipseq diffbind R written 9 months ago by kyliecode0 • updated 9 months ago by Rory Stark2.5k
2
votes
1
answer
232
views
1
answer
complex design for chip-seq analysis
chipseq limma multiple factor design design matrix csaw written 8 months ago by Assa Yeroslaviz1.4k • updated 8 months ago by Aaron Lun20k
2
votes
2
answers
312
views
2
answers
3
votes
2
answers
309
views
2
answers
dba.count with pre-defined regions
chipseq diffbind dba.count dba written 7 months ago by sylvia10 • updated 7 months ago by Rory Stark2.5k
0
votes
1
answer
395
views
1
answer
How to install chipseq package
chipseq written 9.4 years ago by Yuan Hao80 • updated 9.4 years ago by Patrick Aboyoun1.6k
0
votes
1
answer
323
views
1
answer
0
votes
0
answers
368
views
0
answers
ChIPpeakAnnot -names field requried
chipseq written 8.5 years ago by Julie Zhu3.8k
0
votes
2
answers
557
views
2
answers
chip-seq data analysis
transcription chipseq alignment written 8.4 years ago by Tiandao Li60 • updated 8.4 years ago by Sean Davis21k
0
votes
0
answers
377
views
0
answers
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