8
votes
3
answers
2.8k
views
5 follow
3
answers
ChIPseq-style peak calling for paired-end sequencing?
dnaseq chipseq bayespeak narrowpeaks atac written 2.7 years ago by samuel collombet110 • updated 2.6 years ago by Gordon Smyth32k
0
votes
1
answer
442
views
1
answer
DESeq on CCAT identified chipseq peaks
chipseq deseq written 3.7 years ago by Guest User12k • updated 3.7 years ago by Rory Stark2.2k
3
votes
4
answers
720
views
4
answers
0
votes
3
answers
562
views
3
answers
5
votes
2
answers
752
views
2
answers
Score column for DiffBind::dba.peakset
chipseq diffbind written 2.8 years ago by teckpor0 • updated 2.8 years ago by Gord Brown560
2
votes
5
answers
833
views
5
answers
7
votes
3
answers
1.6k
views
3
answers
0
votes
1
answer
458
views
1
answer
Error in ChIPQC
chipseq chipq written 2.3 years ago by lindahove10 • updated 2.3 years ago by Valerie Obenchain ♦♦ 6.4k
4
votes
1
answer
695
views
1
answer
2
votes
1
answer
346
views
1
answer
1
vote
1
answer
364
views
1
answer
question regarding custom normalizationFactors in DESeq2
chipseq normalization deseq2 R written 16 months ago by walter.eckalbar0 • updated 16 months ago by Simon Anders3.4k
0
votes
1
answer
299
views
1
answer
2
votes
1
answer
313
views
1
answer
DiffBind consensus peak help
chipseq diffbind R written 4 months ago by reubenmcgregor880 • updated 4 months ago by Rory Stark2.2k
2
votes
1
answer
176
views
1
answer
ChIPseeker mapping between keys and columns
chipseq chipseeker written 3 months ago by rbronste50 • updated 3 months ago by Gavin Kelly550
1
vote
1
answer
130
views
1
answer
DiffBind error: diffbind DESeq2 analysis has not been run for this contrast
chipseq diffbind R written 3 months ago by kyliecode0 • updated 3 months ago by Rory Stark2.2k
2
votes
1
answer
143
views
1
answer
complex design for chip-seq analysis
chipseq limma multiple factor design design matrix csaw written 12 weeks ago by Assa Yeroslaviz1.3k • updated 12 weeks ago by Aaron Lun18k
2
votes
2
answers
190
views
2
answers
3
votes
2
answers
167
views
2
answers
dba.count with pre-defined regions
chipseq diffbind dba.count dba written 5 weeks ago by sylvia10 • updated 5 weeks ago by Rory Stark2.2k
0
votes
1
answer
307
views
1
answer
How to install chipseq package
chipseq written 8.9 years ago by Yuan Hao80 • updated 8.9 years ago by Patrick Aboyoun1.6k
0
votes
1
answer
295
views
1
answer
0
votes
0
answers
327
views
0
answers
ChIPpeakAnnot -names field requried
chipseq written 8.0 years ago by Julie Zhu3.8k
0
votes
2
answers
492
views
2
answers
chip-seq data analysis
transcription chipseq alignment written 7.9 years ago by Tiandao Li60 • updated 7.9 years ago by Sean Davis21k
0
votes
0
answers
326
views
0
answers
0
votes
0
answers
480
views
0
answers
0
votes
1
answer
459
views
1
answer
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