18
votes
4
answers
5.1k
views
4
answers
DESeq2 for ChIP-seq differential peaks
chipseq deseq deseq2 written 2.4 years ago by tangming200590 • updated 6 months ago by k.vitting.seerup20
8
votes
3
answers
2.8k
views
5 follow
3
answers
ChIPseq-style peak calling for paired-end sequencing?
dnaseq chipseq bayespeak narrowpeaks atac written 2.7 years ago by samuel collombet110 • updated 2.6 years ago by Gordon Smyth32k
0
votes
0
answers
1.9k
views
0
answers
3
votes
1
answer
1.7k
views
1
answer
DiffBind dba.peakset() and consensus peaks
chipseq diffbind written 3.1 years ago by Georg Otto120 • updated 3.1 years ago by Rory Stark2.2k
6
votes
0
answers
1.6k
views
0
answers
7
votes
3
answers
1.6k
views
3
answers
0
votes
0
answers
1.4k
views
0
answers
0
votes
1
answer
1.3k
views
1
answer
0
votes
0
answers
1.1k
views
0
answers
1
vote
0
answers
1.1k
views
0
answers
0
votes
2
answers
1.0k
views
2
answers
unknown error in DiffBind package
chipseq diffbind written 3.8 years ago by Guest User12k • updated 3.7 years ago by Rory Stark2.2k
0
votes
1
answer
919
views
1
answer
Generating unexpected peaks from DiffBind
chipseq diffbind written 2.1 years ago by michael.alexander.finger0 • updated 2.1 years ago by Rory Stark2.2k
3
votes
6
answers
900
views
6
answers
ChIPQC and broadPeak input
chipseq chipqc chip-seq written 2.4 years ago by lindahove10
2
votes
5
answers
833
views
5
answers
0
votes
2
answers
784
views
2
answers
0
votes
0
answers
760
views
0
answers
5
votes
2
answers
753
views
2
answers
Score column for DiffBind::dba.peakset
chipseq diffbind written 2.8 years ago by teckpor0 • updated 2.8 years ago by Gord Brown560
0
votes
0
answers
728
views
0
answers
3
votes
4
answers
722
views
4
answers
4
votes
1
answer
696
views
1
answer
0
votes
2
answers
691
views
2
answers
Extracting overlapping gene names from a list of peaks
chipseq written 4.5 years ago by Patrick Schorderet20 • updated 4.5 years ago by Michael Lawrence9.9k
1
vote
1
answer
690
views
1
answer
ChIP-seq, peak annotation using ChIPpeakAnno
chipseq chippeakanno written 2.2 years ago by michaelR0 • updated 2.2 years ago by Ou, Jianhong1.0k
0
votes
0
answers
678
views
0
answers
0
votes
2
answers
673
views
2
answers
DiffBind fails to derive consensus peaksets
chipseq diffbind software error written 2.7 years ago by Nicolas Delhomme320 • updated 2.7 years ago by Gord Brown560
0
votes
1
answer
670
views
1
answer
ChipSeq binning and normalization
chipseq bioconductor written 2.3 years ago by ngs060 • updated 2.3 years ago by Aaron Lun18k
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