18
votes
4
answers
6.4k
views
4
answers
DESeq2 for ChIP-seq differential peaks
chipseq deseq deseq2 written 2.9 years ago by tangming200590 • updated 12 months ago by k.vitting.seerup20
8
votes
3
answers
3.1k
views
5 follow
3
answers
ChIPseq-style peak calling for paired-end sequencing?
dnaseq chipseq bayespeak narrowpeaks atac written 3.2 years ago by samuel collombet120 • updated 3.2 years ago by Gordon Smyth34k
0
votes
0
answers
2.2k
views
0
answers
3
votes
1
answer
2.0k
views
1
answer
DiffBind dba.peakset() and consensus peaks
chipseq diffbind written 3.6 years ago by Georg Otto120 • updated 3.6 years ago by Rory Stark2.5k
7
votes
3
answers
1.9k
views
3
answers
6
votes
0
answers
1.8k
views
0
answers
0
votes
1
answer
1.5k
views
1
answer
0
votes
0
answers
1.5k
views
0
answers
0
votes
0
answers
1.3k
views
0
answers
1
vote
0
answers
1.2k
views
0
answers
0
votes
2
answers
1.2k
views
2
answers
unknown error in DiffBind package
chipseq diffbind written 4.3 years ago by Guest User12k • updated 4.2 years ago by Rory Stark2.5k
1
vote
1
answer
1.1k
views
1
answer
Generating unexpected peaks from DiffBind
chipseq diffbind written 2.6 years ago by michael.alexander.finger0 • updated 2.6 years ago by Rory Stark2.5k
3
votes
6
answers
1.0k
views
6
answers
ChIPQC and broadPeak input
chipseq chipqc chip-seq written 2.9 years ago by lindahove10
2
votes
5
answers
939
views
5
answers
4
votes
1
answer
924
views
1
answer
0
votes
0
answers
899
views
0
answers
0
votes
2
answers
882
views
2
answers
1
vote
1
answer
877
views
1
answer
ChIP-seq, peak annotation using ChIPpeakAnno
chipseq chippeakanno written 2.7 years ago by michaelR0 • updated 2.7 years ago by Ou, Jianhong1.1k
5
votes
2
answers
868
views
2
answers
Score column for DiffBind::dba.peakset
chipseq diffbind written 3.3 years ago by teckpor0 • updated 3.3 years ago by Gord Brown570
0
votes
0
answers
833
views
0
answers
0
votes
0
answers
831
views
0
answers
3
votes
4
answers
824
views
4
answers
0
votes
1
answer
823
views
1
answer
ChipSeq binning and normalization
chipseq bioconductor written 2.8 years ago by ngs060 • updated 2.8 years ago by Aaron Lun20k
3
votes
1
answer
801
views
1
answer
creating custom genome annotation for the ChIPQC package
chipseq chipqc qc written 3.0 years ago by Philip Lijnzaad160 • updated 3.0 years ago by Thomas Carroll390
0
votes
2
answers
796
views
2
answers
Extracting overlapping gene names from a list of peaks
chipseq written 5.0 years ago by Patrick Schorderet20 • updated 5.0 years ago by Michael Lawrence10k
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