18
votes
4
answers
4.7k
views
4
answers
DESeq2 for ChIP-seq differential peaks
chipseq deseq deseq2 written 2.2 years ago by tangming200590 • updated 4 months ago by k.vitting.seerup10
8
votes
3
answers
2.7k
views
5 follow
3
answers
ChIPseq-style peak calling for paired-end sequencing?
dnaseq chipseq bayespeak narrowpeaks atac written 2.5 years ago by samuel collombet100 • updated 2.5 years ago by Gordon Smyth32k
0
votes
0
answers
1.8k
views
0
answers
3
votes
1
answer
1.7k
views
1
answer
DiffBind dba.peakset() and consensus peaks
chipseq diffbind written 2.9 years ago by Georg Otto120 • updated 2.9 years ago by Rory Stark2.1k
6
votes
0
answers
1.6k
views
0
answers
7
votes
3
answers
1.5k
views
3
answers
0
votes
0
answers
1.3k
views
0
answers
0
votes
1
answer
1.2k
views
1
answer
1
vote
0
answers
1.1k
views
0
answers
0
votes
2
answers
991
views
2
answers
unknown error in DiffBind package
chipseq diffbind written 3.6 years ago by Guest User12k • updated 3.6 years ago by Rory Stark2.1k
0
votes
0
answers
960
views
0
answers
0
votes
1
answer
864
views
1
answer
Generating unexpected peaks from DiffBind
chipseq diffbind written 23 months ago by michael.alexander.finger0 • updated 22 months ago by Rory Stark2.1k
3
votes
6
answers
857
views
6
answers
ChIPQC and broadPeak input
chipseq chipqc chip-seq written 2.2 years ago by lindahove10
2
votes
5
answers
798
views
5
answers
0
votes
2
answers
750
views
2
answers
5
votes
2
answers
718
views
2
answers
Score column for DiffBind::dba.peakset
chipseq diffbind written 2.6 years ago by teckpor0 • updated 2.6 years ago by Gord Brown540
0
votes
0
answers
717
views
0
answers
0
votes
0
answers
696
views
0
answers
3
votes
4
answers
689
views
4
answers
0
votes
2
answers
663
views
2
answers
Extracting overlapping gene names from a list of peaks
chipseq written 4.3 years ago by Patrick Schorderet20 • updated 4.3 years ago by Michael Lawrence9.8k
0
votes
2
answers
657
views
2
answers
DiffBind fails to derive consensus peaksets
chipseq diffbind software error written 2.5 years ago by Nicolas Delhomme320 • updated 2.5 years ago by Gord Brown540
1
vote
1
answer
644
views
1
answer
ChIP-seq, peak annotation using ChIPpeakAnno
chipseq chippeakanno written 2.0 years ago by michaelR0 • updated 2.0 years ago by Ou, Jianhong1000
4
votes
1
answer
638
views
1
answer
0
votes
0
answers
630
views
0
answers
0
votes
1
answer
623
views
1
answer
ChipSeq binning and normalization
chipseq bioconductor written 2.2 years ago by ngs060 • updated 2.2 years ago by Aaron Lun17k
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