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Using deseq2 with batch effects and classification as downstream analysis
classification deseq2 batch effect written 5 months ago by Maryam • 0 • updated 5 months ago by Michael Love ♦ 22k
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CRImage createTrainingSet package is not available to install
classification crimage image analysis segmentation cell types written 7 months ago by Jenny.chien • 0
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147
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NMF pre-processsing effect on classification
classification bioconductor log2 nmf written 9 months ago by Seymoo • 0
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396
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Classification with large number of qualitative variables
classification R qualitative variables high dimensionnal written 2.3 years ago by crichard • 0 • updated 2.3 years ago by markus.riester • 110
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390
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Help in interpreting the plot of the function plotRLDF in limma package for microarray dataset concerning two categorical classes
microarray classification limma plotrldf linear discriminant function written 2.8 years ago by svlachavas • 640
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Questions about the correct implementation of the function plotRLDF from R package limma regarding classification of a microarray dataset
microarray classification limma plotrldf written 2.8 years ago by svlachavas • 640
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Package for classifying two classes of sequences using hidden markov models?
classification hmm written 3.0 years ago by vinod.acear • 30
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edgeR GLM fitted values
rnaseq classification edger glm written 3.1 years ago by Mattia • 10 • updated 3.1 years ago by Aaron Lun • 23k
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618
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Possible methodologies of machine learning in R that can assimilate continuous variables along gene expression data for microarray classification
microarray classification machinelearning caret multivariate written 3.4 years ago by svlachavas • 640 • updated 3.4 years ago by Steve Lianoglou ♦ 12k
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Error in R package "cancerclass" with function nvalidate
classification bioconductor machinelearning cancerclass written 3.9 years ago by svlachavas • 640
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404
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Ranked genes generated by learning datasets and Differentially expressed genes generated by original data
classification written 4.6 years ago by Guest User • 12k • updated 4.6 years ago by Sean Davis ♦ 21k
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600
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Suitable learning sets, gene selection methods and classification methods for low replicated microarray samples
classification cma written 4.7 years ago by Guest User • 12k • updated 4.7 years ago by Sean Davis ♦ 21k
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Course "CSAMA 2014" Computational Statistics for Genome Biology
annotation classification clustering written 4.9 years ago by Wolfgang Huber ♦ 13k
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679
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MLSeq Mathematical Concepts
classification edger deseq mlseq written 4.9 years ago by Dario Strbenac • 1.4k • updated 4.9 years ago by Wolfgang Huber ♦ 13k
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666
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Support vector regression
classification regression written 5.0 years ago by Guest User • 12k • updated 5.0 years ago by Steve Lianoglou ♦ 12k
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650
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CSAMA 2014: Computational Statistics for Genome Biology - June 22-27, 2014
sequencing annotation classification clustering written 5.1 years ago by Wolfgang Huber ♦ 13k
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740
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CfP: CAMDA 2013 - 12th International Conference on Critical Assessment of Massive Data Analysis
genetics classification regression written 5.9 years ago by CAMDA 2013 • 30
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533
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CAMDA 2013 Challenge: Big Data in Life Sciences
sequencing microarray genetics classification clustering regression written 6.0 years ago by CAMDA 2013 • 30
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2.0k
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3
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DESeq2
normalization classification clustering deseq cqn deseq2 written 6.0 years ago by Wolfgang Huber ♦ 13k • updated 6.0 years ago by Michael Love ♦ 22k
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Bioconductor Digest, Vol 121, Issue 13
rnaseq microarray normalization go classification clustering cancer mus musculus probe written 6.0 years ago by Matthew Thornton • 300
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Subsetting expression sets for mass spec data - second ask
classification cancer process written 6.3 years ago by McGee, Monnie • 300 • updated 6.3 years ago by Sean Davis ♦ 21k
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PAMR- Package: Workflow and/or other methods
classification written 6.3 years ago by Peter Kupfer • 70 • updated 6.3 years ago by Sean Davis ♦ 21k
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679
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Classification in Mass Spectrometry Data
microarray classification cancer ovarian process mlinterfaces assign written 6.4 years ago by McGee, Monnie • 300
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480
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Questions regarding MCRestimate package
classification mcrestimate written 6.6 years ago by Guest User • 12k
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564
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Overlapping ROC plots
classification roc graph written 6.7 years ago by Yadav Sapkota • 130
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