1
vote
0
answers
781
views
0
answers
Unexpected clustering of samples after batch effect removal with ComBat
combat written 2.9 years ago by jaro.slamecka90 • updated 27 days ago by Gordon Smyth32k
1
vote
0
answers
165
views
0
answers
0
votes
2
answers
658
views
2
answers
Combat in gene pattern error annotation
software error combat gene pattern written 2.6 years ago by radhikaraheja0 • updated 11 weeks ago by shaymaa_s_elgaafary0
0
votes
0
answers
104
views
0
answers
0
votes
1
answer
121
views
1
answer
2
votes
3
answers
170
views
3
answers
0
votes
1
answer
221
views
1
answer
RNA-Seq Batch correction negative values
sva combat rna-seq scran batch-effect written 5 months ago by rmf0 • updated 5 months ago by Aaron Lun18k
1
vote
1
answer
572
views
1
answer
0
votes
0
answers
539
views
0
answers
0
votes
1
answer
372
views
1
answer
DESeq2, outlier correction, Combat, NMF
deseq2 combat outliers nmf written 8 months ago by noname0 • updated 8 months ago by Michael Love16k
0
votes
0
answers
303
views
0
answers
1
vote
1
answer
178
views
1
answer
How to interpret the SVA results
sva combat rna-seq written 11 months ago by xie1860 • updated 11 months ago by James W. MacDonald45k
4
votes
1
answer
342
views
1
answer
Adjust for multiple batches using combat
limma sva combat written 11 months ago by juls0 • updated 11 months ago by Aaron Lun18k
3
votes
1
answer
523
views
1
answer
How to normalize chromatin and RNA-Seq data together ?
sva deseq2 combat atac atac-seq written 12 months ago by g.atla0 • updated 12 months ago by Michael Love16k
0
votes
0
answers
259
views
0
answers
0
votes
1
answer
271
views
1
answer
0
votes
1
answer
1.1k
views
1
answer
ComBat to remove batch effects from RNA Seq data
rnaseq combat written 16 months ago by kerrypop0 • updated 16 months ago by polemiraza40
4
votes
3
answers
658
views
3
answers
3
votes
3
answers
511
views
3
answers
9
votes
2
answers
794
views
2
answers
voom with combat
limma combat voom batch effect written 19 months ago by eldronzhou10 • updated 19 months ago by Gordon Smyth32k
0
votes
1
answer
301
views
1
answer
10
votes
3
answers
5.6k
views
7 follow
3
answers
Batch correction in DESeq2
rnaseq deseq2 combat removebatcheffect() batch effect written 2.2 years ago by AB0 • updated 21 months ago by adam0
2
votes
1
answer
372
views
1
answer
comBat/SVA with no "variable of interest" and two batches
sva combat covariates written 22 months ago by TP0 • updated 22 months ago by chris86360
0
votes
0
answers
290
views
0
answers
5
votes
1
answer
823
views
1
answer
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