1
vote
0
answers
863
views
0
answers
Unexpected clustering of samples after batch effect removal with ComBat
combat written 3.2 years ago by jaro.slamecka100 • updated 3 months ago by Gordon Smyth33k
1
vote
0
answers
228
views
0
answers
0
votes
2
answers
689
views
2
answers
Combat in gene pattern error annotation
software error combat gene pattern written 2.8 years ago by radhikaraheja0 • updated 5 months ago by shaymaa_s_elgaafary0
0
votes
0
answers
142
views
0
answers
0
votes
1
answer
151
views
1
answer
2
votes
3
answers
223
views
3
answers
0
votes
1
answer
314
views
1
answer
RNA-Seq Batch correction negative values
sva combat rna-seq scran batch-effect written 8 months ago by rmf0 • updated 8 months ago by Aaron Lun19k
1
vote
1
answer
632
views
1
answer
0
votes
0
answers
562
views
0
answers
0
votes
1
answer
487
views
1
answer
DESeq2, outlier correction, Combat, NMF
deseq2 combat outliers nmf written 11 months ago by noname0 • updated 11 months ago by Michael Love17k
0
votes
0
answers
352
views
0
answers
1
vote
1
answer
222
views
1
answer
How to interpret the SVA results
sva combat rna-seq written 14 months ago by xie1860 • updated 14 months ago by James W. MacDonald46k
5
votes
1
answer
443
views
1
answer
Adjust for multiple batches using combat
limma sva combat written 14 months ago by juls0 • updated 14 months ago by Aaron Lun19k
3
votes
1
answer
650
views
1
answer
How to normalize chromatin and RNA-Seq data together ?
sva deseq2 combat atac atac-seq written 15 months ago by g.atla0 • updated 15 months ago by Michael Love17k
0
votes
0
answers
301
views
0
answers
0
votes
1
answer
300
views
1
answer
2
votes
1
answer
1.4k
views
1
answer
ComBat to remove batch effects from RNA Seq data
rnaseq combat written 19 months ago by kerrypop10 • updated 19 months ago by polemiraza50
4
votes
3
answers
785
views
3
answers
3
votes
3
answers
573
views
3
answers
11
votes
2
answers
985
views
2
answers
voom with combat
limma combat voom batch effect written 22 months ago by eldronzhou10 • updated 22 months ago by Gordon Smyth33k
0
votes
1
answer
340
views
1
answer
10
votes
3
answers
6.9k
views
7 follow
3
answers
Batch correction in DESeq2
rnaseq deseq2 combat removebatcheffect() batch effect written 2.4 years ago by AB10 • updated 24 months ago by adam0
2
votes
1
answer
405
views
1
answer
comBat/SVA with no "variable of interest" and two batches
sva combat covariates written 2.1 years ago by TP0 • updated 2.1 years ago by chris86380
0
votes
0
answers
334
views
0
answers
7
votes
1
answer
962
views
1
answer
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