0
votes
1
answer
60
views
1
answer
A problem in using Combat
sva combat written 7 weeks ago by linw0 • updated 7 weeks ago by W. Evan Johnson760
1
vote
0
answers
919
views
0
answers
Unexpected clustering of samples after batch effect removal with ComBat
combat written 3.4 years ago by jaro.slamecka100 • updated 6 months ago by Gordon Smyth34k
1
vote
0
answers
282
views
0
answers
0
votes
2
answers
719
views
2
answers
Combat in gene pattern error annotation
software error combat gene pattern written 3.0 years ago by radhikaraheja0 • updated 8 months ago by shaymaa_s_elgaafary0
0
votes
0
answers
170
views
0
answers
0
votes
1
answer
180
views
1
answer
2
votes
3
answers
271
views
3
answers
0
votes
1
answer
438
views
1
answer
RNA-Seq Batch correction negative values
sva combat rna-seq scran batch-effect written 10 months ago by rmf0 • updated 10 months ago by Aaron Lun20k
1
vote
1
answer
692
views
1
answer
0
votes
0
answers
581
views
0
answers
0
votes
1
answer
593
views
1
answer
DESeq2, outlier correction, Combat, NMF
deseq2 combat outliers nmf written 14 months ago by noname0 • updated 14 months ago by Michael Love19k
0
votes
0
answers
382
views
0
answers
1
vote
1
answer
241
views
1
answer
How to interpret the SVA results
sva combat rna-seq written 17 months ago by xie1860 • updated 17 months ago by James W. MacDonald47k
5
votes
1
answer
535
views
1
answer
Adjust for multiple batches using combat
limma sva combat written 17 months ago by juls0 • updated 17 months ago by Aaron Lun20k
3
votes
1
answer
762
views
1
answer
How to normalize chromatin and RNA-Seq data together ?
sva deseq2 combat atac atac-seq written 18 months ago by g.atla0 • updated 18 months ago by Michael Love19k
0
votes
0
answers
325
views
0
answers
0
votes
1
answer
326
views
1
answer
2
votes
1
answer
1.8k
views
1
answer
ComBat to remove batch effects from RNA Seq data
rnaseq combat written 22 months ago by kerrypop10 • updated 22 months ago by polemiraza50
4
votes
3
answers
900
views
3
answers
3
votes
3
answers
616
views
3
answers
11
votes
2
answers
1.1k
views
2
answers
voom with combat
limma combat voom batch effect written 2.1 years ago by eldronzhou10 • updated 2.1 years ago by Gordon Smyth34k
0
votes
1
answer
369
views
1
answer
10
votes
3
answers
8.0k
views
7 follow
3
answers
Batch correction in DESeq2
rnaseq deseq2 combat removebatcheffect() batch effect written 2.7 years ago by AB10 • updated 2.2 years ago by adam0
2
votes
1
answer
446
views
1
answer
comBat/SVA with no "variable of interest" and two batches
sva combat covariates written 2.3 years ago by TP0 • updated 2.3 years ago by chris86380
0
votes
0
answers
379
views
0
answers
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